Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74272 | Canola | nucleus | 99.69 | 99.69 |
| AT3G02150.2 | Thale cress | nucleus | 80.0 | 72.11 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 76.25 | 61.46 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 75.94 | 56.64 |
| Bra001032.1-P | Field mustard | nucleus | 88.44 | 52.6 |
| Solyc02g065800.1.1 | Tomato | cytosol, plastid | 22.5 | 50.7 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 39.69 | 36.39 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 23.75 | 34.86 |
| KRG93654 | Soybean | nucleus | 40.62 | 34.76 |
| KRH45058 | Soybean | nucleus | 37.19 | 33.52 |
| KRH01308 | Soybean | cytosol | 38.12 | 31.77 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 27.19 | 31.64 |
| Os05t0513100-01 | Rice | nucleus | 28.44 | 30.95 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 26.56 | 30.91 |
| CDX78321 | Canola | nucleus, plastid | 23.75 | 30.89 |
| CDX81083 | Canola | nucleus, plastid | 23.44 | 30.74 |
| Zm00001d038683_P001 | Maize | cytosol | 28.44 | 30.54 |
| TraesCS3A01G302900.1 | Wheat | nucleus | 26.25 | 30.22 |
| EES18493 | Sorghum | cytosol | 28.12 | 30.2 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 26.25 | 30.0 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 25.94 | 29.86 |
| EES03657 | Sorghum | nucleus | 26.56 | 29.41 |
| Zm00001d043368_P001 | Maize | cytosol | 25.94 | 29.33 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 25.94 | 28.42 |
| Os01t0763200-01 | Rice | cytosol | 26.56 | 27.69 |
| CDY68618 | Canola | nucleus, plastid | 25.94 | 27.48 |
| TraesCS1A01G332600.1 | Wheat | nucleus | 26.25 | 27.45 |
| CDY47005 | Canola | nucleus, plastid | 25.62 | 27.24 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 25.94 | 26.95 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 26.25 | 26.84 |
| CDY02180 | Canola | nucleus | 28.75 | 25.14 |
| CDY58696 | Canola | nucleus | 28.44 | 25.0 |
| CDX90234 | Canola | nucleus | 20.62 | 21.43 |
| CDY59229 | Canola | nucleus | 20.94 | 21.41 |
| CDX99891 | Canola | nucleus | 20.94 | 21.14 |
| CDY26285 | Canola | nucleus | 20.62 | 20.75 |
| CDY60877 | Canola | nucleus | 22.5 | 20.11 |
| CDY01537 | Canola | nucleus | 18.75 | 19.54 |
| CDY55633 | Canola | nucleus | 22.19 | 18.59 |
| CDY10772 | Canola | nucleus | 19.69 | 18.21 |
| CDY10771 | Canola | nucleus | 19.69 | 18.16 |
| CDY24724 | Canola | nucleus | 19.69 | 18.1 |
| CDY02519 | Canola | nucleus | 19.06 | 17.73 |
| CDY20097 | Canola | nucleus | 19.06 | 17.09 |
| CDX75802 | Canola | nucleus | 21.25 | 16.83 |
| CDY68596 | Canola | cytosol, nucleus | 20.0 | 16.58 |
| CDX82453 | Canola | nucleus | 20.94 | 16.54 |
| CDY18525 | Canola | nucleus | 13.44 | 15.19 |
| CDX95517 | Canola | nucleus | 13.44 | 15.19 |
| CDY12633 | Canola | nucleus | 14.38 | 14.29 |
| CDY46042 | Canola | nucleus | 15.31 | 14.16 |
| CDX96104 | Canola | nucleus | 15.0 | 13.68 |
| CDY07432 | Canola | nucleus | 15.0 | 13.64 |
| CDY01793 | Canola | nucleus | 15.0 | 13.6 |
| CDY28898 | Canola | nucleus | 15.0 | 13.56 |
| CDX81550 | Canola | nucleus | 12.19 | 11.54 |
| CDY33597 | Canola | nucleus | 11.56 | 11.46 |
| CDY45852 | Canola | nucleus | 11.88 | 11.45 |
| CDY52898 | Canola | nucleus | 15.0 | 11.29 |
| CDX82339 | Canola | nucleus | 14.38 | 10.85 |
| CDY62798 | Canola | nucleus | 13.44 | 10.46 |
| CDX78849 | Canola | nucleus, plastid | 5.62 | 7.53 |
| CDX97627 | Canola | mitochondrion | 5.62 | 6.57 |
Protein Annotations
| EnsemblPlants:CDX91977 | EnsemblPlantsGene:GSBRNA2T00153625001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF5 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX91977 | ProteinID:CDX91977.1 | SEG:seg |
| UniParc:UPI0004EB1AEC | MapMan:15.5.19 | : | : | : | : |
Description
BnaC03g32790D
Coordinates
chrLK031870:+:1086268..1087230
Molecular Weight (calculated)
35754.4 Da
IEP (calculated)
7.081
GRAVY (calculated)
-0.818
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTGPWKDTN DDVSGQTRTR REGESEEAVA TTKRPATISS SSSWMKSKDP RIVRVSRAFG GKDRHSKVCT LRGLRDRRVR LSVPTAIQLY DLQERLGLDQ
101: PSKAVDWLLN VAKEEIDELP PLPVSPETFT LFNHHQSFLN LGQRPGQDPT QLGFKINGCV EESTTTSREE NNNERGEKDV SFENNHHIGS YGTYHNMEHH
201: HQQHSSFQAD YHQHQLHSLV PFPSQFLVCP MTTLSTTTTT TQSLFPSSSS AGSWTMETTD PRRMVSHFQM PLMGSSSSSA SQNISTLYSL LHGSSSNNGS
301: SNRMSSVQLN QTSRGSDNPM
101: PSKAVDWLLN VAKEEIDELP PLPVSPETFT LFNHHQSFLN LGQRPGQDPT QLGFKINGCV EESTTTSREE NNNERGEKDV SFENNHHIGS YGTYHNMEHH
201: HQQHSSFQAD YHQHQLHSLV PFPSQFLVCP MTTLSTTTTT TQSLFPSSSS AGSWTMETTD PRRMVSHFQM PLMGSSSSSA SQNISTLYSL LHGSSSNNGS
301: SNRMSSVQLN QTSRGSDNPM
001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
Arabidopsis Description
TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.