Factsheet for PGSC0003DMT400068332

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065800.1.1	Tomato	cytosol, plastid	54.59	83.8
PGSC0003DMT400003453	Potato	nucleus, plastid	43.58	33.57
Zm00001d010730_P001	Maize	cytosol, plastid	36.7	29.09
EES18493	Sorghum	cytosol	38.99	28.52
TraesCS3A01G302900.1	Wheat	nucleus	35.78	28.06
HORVU3Hr1G073830.1	Barley	nucleus	35.32	27.7
TraesCS3D01G298900.1	Wheat	nucleus	34.86	27.64
TraesCS3B01G333400.1	Wheat	nucleus	35.32	27.5
Zm00001d043368_P001	Maize	cytosol	35.32	27.21
Zm00001d038683_P001	Maize	cytosol	37.16	27.18
EES03657	Sorghum	nucleus	35.78	26.99
Os05t0513100-01	Rice	nucleus	36.24	26.87
HORVU1Hr1G077080.1	Barley	nucleus	35.78	26.71
TraesCS1A01G332600.1	Wheat	nucleus	35.78	25.49
Os01t0763200-01	Rice	cytosol	35.32	25.08
TraesCS1B01G346300.1	Wheat	nucleus	35.32	25.0
TraesCS1D01G335300.1	Wheat	nucleus	35.78	24.92
Bra039158.1-P	Field mustard	nucleus	33.95	23.95
PGSC0003DMT400010453	Potato	nucleus, plastid	33.49	23.93
CDX91977	Canola	nucleus	34.86	23.75
CDX74272	Canola	nucleus	34.86	23.75
PGSC0003DMT400063327	Potato	nucleus, plastid	36.7	23.26
AT3G02150.2	Thale cress	nucleus	33.95	20.85
PGSC0003DMT400008673	Potato	nucleus	13.76	19.11
CDY60475	Canola	endoplasmic reticulum, golgi	34.4	18.89
CDY43255	Canola	endoplasmic reticulum, golgi	34.4	17.48
PGSC0003DMT400051253	Potato	nucleus	27.06	17.25
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	18.35	16.81
PGSC0003DMT400024329	Potato	nucleus	22.48	15.76
PGSC0003DMT400059117	Potato	nucleus	22.48	14.67
Bra001032.1-P	Field mustard	nucleus	34.86	14.13
PGSC0003DMT400032269	Potato	nucleus	24.77	13.5
PGSC0003DMT400010380	Potato	nucleus	16.97	13.26
PGSC0003DMT400039786	Potato	nucleus	24.77	12.83
PGSC0003DMT400019324	Potato	nucleus	19.27	11.02
PGSC0003DMT400002153	Potato	nucleus	17.43	10.73
PGSC0003DMT400014572	Potato	nucleus	18.35	10.58
PGSC0003DMT400068478	Potato	nucleus	22.02	9.21

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M1CIV8
PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400026568	PGSC:PGSC0003DMG400026568	EnsemblPlants:PGSC0003DMT400068332	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296864C	SEG:seg	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026568]

Coordinates

chr2:-:25059386..25062112

Molecular Weight (calculated)

24637.1 Da

IEP (calculated)

8.806

GRAVY (calculated)

-0.633

Length

218 amino acids

Sequence
(BLAST)

001: MITREVDTSD NKIPKKSSWT SFKDPRIVRV SRAFGGKDRH SKVLTVKGVR DRRVRLSVPT ALQLYDLQDK LGLDQPSKVV DWLLNEAKHE IDQLPPLQMP
101: PIRDQTGLPL TGLRKETMVV SDEDTVKLDA RNLDLKDNSN NNNNSNSFSF GLYQNNHSSQ SVHSGSHHGV AVQHEYEEIQ NFNVMAALPS TIYNMPLSSQ
201: VLVYPPAGLS QYFFNPHN

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.