CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039158.1-P	Field mustard	nucleus	75.82	97.41
CDY43255	Canola	endoplasmic reticulum, golgi	89.42	82.75
CDX74272	Canola	nucleus	61.46	76.25
CDX91977	Canola	nucleus	61.46	76.25
AT3G02150.2	Thale cress	nucleus	61.96	69.3
Solyc02g065800.1.1	Tomato	cytosol, plastid	18.89	52.82
VIT_14s0068g00330.t01	Wine grape	nucleus	32.24	36.68
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	18.89	34.4
KRG93654	Soybean	nucleus	31.74	33.69
KRH45058	Soybean	nucleus	28.97	32.39
KRH01308	Soybean	cytosol	30.98	32.03
CDX78321	Canola	nucleus, plastid	19.65	31.71
CDX81083	Canola	nucleus, plastid	19.4	31.56
Zm00001d010730_P001	Maize	cytosol, plastid	21.41	30.91
Zm00001d038683_P001	Maize	cytosol	22.42	29.87
EES18493	Sorghum	cytosol	21.91	29.19
TraesCS3D01G298900.1	Wheat	nucleus	20.15	29.09
Os05t0513100-01	Rice	nucleus	21.41	28.91
TraesCS3A01G302900.1	Wheat	nucleus	20.15	28.78
HORVU1Hr1G077080.1	Barley	nucleus	21.16	28.77
EES03657	Sorghum	nucleus	20.91	28.72
TraesCS3B01G333400.1	Wheat	nucleus	20.15	28.57
Zm00001d043368_P001	Maize	cytosol	20.15	28.27
TraesCS1A01G332600.1	Wheat	nucleus	21.66	28.1
HORVU3Hr1G073830.1	Barley	nucleus	19.65	28.06
TraesCS1B01G346300.1	Wheat	nucleus	21.41	27.6
TraesCS1D01G335300.1	Wheat	nucleus	21.66	27.48
Os01t0763200-01	Rice	cytosol	21.16	27.36
CDY47005	Canola	nucleus, plastid	20.4	26.91
CDY68618	Canola	nucleus, plastid	20.4	26.82
CDY02180	Canola	nucleus	23.17	25.14
CDY58696	Canola	nucleus	22.92	25.0
CDY26285	Canola	nucleus	17.13	21.38
CDX99891	Canola	nucleus	16.88	21.14
CDX90234	Canola	nucleus	16.12	20.78
CDY59229	Canola	nucleus	16.37	20.77
CDY01537	Canola	nucleus	15.87	20.52
CDY60877	Canola	nucleus	16.88	18.72
CDY55633	Canola	nucleus	17.38	18.06
CDY02519	Canola	nucleus	15.62	18.02
CDY20097	Canola	nucleus	14.86	16.53
CDX75802	Canola	nucleus	16.62	16.34
CDY68596	Canola	cytosol, nucleus	15.62	16.06
CDX82453	Canola	nucleus	16.37	16.05
CDY10772	Canola	nucleus	13.85	15.9
CDY10771	Canola	nucleus	13.85	15.85
CDY24724	Canola	nucleus	13.85	15.8
CDX95517	Canola	nucleus	10.58	14.84
CDY18525	Canola	nucleus	10.58	14.84
CDX96104	Canola	nucleus	13.1	14.81
CDY12633	Canola	nucleus	11.84	14.6
CDY01793	Canola	nucleus	12.85	14.45
CDY07432	Canola	nucleus	12.09	13.64
CDY46042	Canola	nucleus	11.84	13.58
CDY28898	Canola	nucleus	12.09	13.56
CDY52898	Canola	nucleus	12.09	11.29
CDY33597	Canola	nucleus	9.07	11.15
CDY45852	Canola	nucleus	9.32	11.14
CDX81550	Canola	nucleus	9.32	10.95
CDX82339	Canola	nucleus	11.34	10.61
CDY62798	Canola	nucleus	10.83	10.46
CDX97627	Canola	mitochondrion	3.78	5.47
CDX78849	Canola	nucleus, plastid	2.52	4.18

Protein Annotations

MapMan:15.5.19	GO:A0A078J3K5	UniProt:A0A078J3K5	EnsemblPlants:CDY60475	ProteinID:CDY60475	ProteinID:CDY60475.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00029644001
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr
TMHMM:TMhelix	InterPro:Transcription_factor_TCP	UniParc:UPI0004EEA19B	SEG:seg	:	:

Description

BnaAnng16870DBnaAnng16870D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J3K5]

Coordinates

chrLK033884:-:37862..39431

Molecular Weight (calculated)

44693.1 Da

IEP (calculated)

8.056

GRAVY (calculated)

-0.350

Length

397 amino acids

Sequence
(BLAST)

001: ACETGRVLIF TSKSIYLFLI FFFFSYSHFI HAFEKEKRNQ ILFFSLSLIL IQSLFFIIIL LLALSNSKTL DLLFKLMTVQ TQELNTSIMN TGPWRDANDD
101: VSGGTRTRRN GEVEEDSEEA VVVAVATSGK PVIKKPPTSI PSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI QLYDLQERLG
201: LDQPSKAVDW LLNAAKDEID ELPPLPVSPE TFSLFNHHQA FLNLSQPPGQ DPTQLGFKIN GCVEESNTTT SREETNNNHI GSYGTYQNME QHQQQHTRFQ
301: ADYPHHQHQF HSIVPIQSQL LVCPVTTSST TTTIQSLFPS SSSAGSRTME TTDPRQMVSH FQMPLMGSSS SSQNISTLYS LLHGYSNPMP SVQFDRK

Best Arabidopsis Sequence Match ( AT3G02150.2 )
(BLAST)

001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM

Arabidopsis Description

TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.