Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029344.1-P | Field mustard | nucleus, plastid | 97.67 | 97.67 |
| CDY68618 | Canola | nucleus, plastid | 97.67 | 97.35 |
| CDY58696 | Canola | nucleus | 84.39 | 69.78 |
| CDY02180 | Canola | nucleus | 84.72 | 69.67 |
| AT5G60970.1 | Thale cress | nucleus | 82.06 | 68.61 |
| CDX78321 | Canola | nucleus, plastid | 51.83 | 63.41 |
| CDX81083 | Canola | nucleus, plastid | 50.5 | 62.3 |
| Solyc03g115010.1.1 | Tomato | plastid | 32.89 | 29.03 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 32.89 | 28.78 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 31.23 | 27.41 |
| CDX74272 | Canola | nucleus | 27.24 | 25.62 |
| CDX91977 | Canola | nucleus | 27.24 | 25.62 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 24.58 | 24.75 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 26.91 | 20.4 |
| CDX99891 | Canola | nucleus | 20.6 | 19.56 |
| CDY26285 | Canola | nucleus | 20.6 | 19.5 |
| CDY59229 | Canola | nucleus | 19.93 | 19.17 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 26.91 | 18.88 |
| CDX90234 | Canola | nucleus | 19.27 | 18.83 |
| CDY01537 | Canola | nucleus | 18.6 | 18.24 |
| CDY60877 | Canola | nucleus | 19.27 | 16.2 |
| CDY20097 | Canola | nucleus | 18.94 | 15.97 |
| CDY02519 | Canola | nucleus | 17.28 | 15.12 |
| CDX82453 | Canola | nucleus | 20.27 | 15.06 |
| CDY68596 | Canola | cytosol, nucleus | 19.27 | 15.03 |
| CDY55633 | Canola | nucleus | 18.94 | 14.92 |
| CDX75802 | Canola | nucleus | 19.93 | 14.85 |
| CDY10772 | Canola | nucleus | 15.28 | 13.29 |
| CDY10771 | Canola | nucleus | 15.28 | 13.26 |
| CDY24724 | Canola | nucleus | 15.28 | 13.22 |
| CDY01793 | Canola | nucleus | 15.28 | 13.03 |
| CDX96104 | Canola | nucleus | 14.95 | 12.82 |
| CDY12633 | Canola | nucleus | 13.62 | 12.73 |
| CDY18525 | Canola | nucleus | 11.63 | 12.37 |
| CDX95517 | Canola | nucleus | 11.63 | 12.37 |
| CDY46042 | Canola | nucleus | 13.95 | 12.14 |
| CDY07432 | Canola | nucleus | 13.95 | 11.93 |
| CDY28898 | Canola | nucleus | 13.95 | 11.86 |
| CDY33597 | Canola | nucleus | 12.29 | 11.46 |
| CDY45852 | Canola | nucleus | 12.62 | 11.45 |
| CDX81550 | Canola | nucleus | 12.62 | 11.24 |
| CDY62798 | Canola | nucleus | 12.96 | 9.49 |
| CDX82339 | Canola | nucleus | 12.29 | 8.73 |
| CDY52898 | Canola | nucleus | 12.29 | 8.71 |
| CDX97627 | Canola | mitochondrion | 3.65 | 4.01 |
| CDX78849 | Canola | nucleus, plastid | 1.99 | 2.51 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078I7W6 | EnsemblPlants:CDY47005 | ProteinID:CDY47005 | ProteinID:CDY47005.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00086514001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF5 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EDB572 | SEG:seg |
Description
BnaC02g41900DBnaC02g41900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7W6]
Coordinates
chrLK032694:-:45298..46848
Molecular Weight (calculated)
33733.9 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.785
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRDCDEDE IQANQEGDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS
101: QPSKVIDWLL EAAKDDVDEL PPLQFPQGFN QMYPSLIFGE SSSTSAASTF PGTNLGFLES WDLGGSSSRT RTRIADTTTT PRESFDLDKG KWIKQDENSN
201: HQDHGFDISH QNFSLTNPYN NNSTSSYYNL GHLQNSLDQS GNNVTVAIPN VPYNNNLNLP PPPTMSSLFP MYPSFLGASH QVVDGAGNLQ LFSSNANRNN
301: R
101: QPSKVIDWLL EAAKDDVDEL PPLQFPQGFN QMYPSLIFGE SSSTSAASTF PGTNLGFLES WDLGGSSSRT RTRIADTTTT PRESFDLDKG KWIKQDENSN
201: HQDHGFDISH QNFSLTNPYN NNSTSSYYNL GHLQNSLDQS GNNVTVAIPN VPYNNNLNLP PPPTMSSLFP MYPSFLGASH QVVDGAGNLQ LFSSNANRNN
301: R
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.