CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005967.1-P	Field mustard	nucleus, plastid	99.19	99.19
CDX81083	Canola	nucleus, plastid	95.53	96.31
AT5G08070.1	Thale cress	nucleus, plastid	72.76	73.97
CDY47005	Canola	nucleus, plastid	63.41	51.83
CDY68618	Canola	nucleus, plastid	63.01	51.32
CDY02180	Canola	nucleus	65.45	43.99
CDY58696	Canola	nucleus	65.04	43.96
PGSC0003DMT400063327	Potato	nucleus, plastid	36.99	26.45
Solyc03g115010.1.1	Tomato	plastid	35.77	25.81
CDX91977	Canola	nucleus	30.89	23.75
CDX74272	Canola	nucleus	30.89	23.75
GSMUA_Achr6P27420_001	Banana	nucleus	28.46	23.41
GSMUA_Achr4P32850_001	Banana	nucleus	32.11	23.03
CDY60475	Canola	endoplasmic reticulum, golgi	31.71	19.65
CDY43255	Canola	endoplasmic reticulum, golgi	32.11	18.41
CDX99891	Canola	nucleus	22.76	17.67
CDY26285	Canola	nucleus	22.76	17.61
CDY01537	Canola	nucleus	21.54	17.26
CDY59229	Canola	nucleus	21.54	16.93
CDX90234	Canola	nucleus	20.73	16.56
CDY20097	Canola	nucleus	23.58	16.25
CDY68596	Canola	cytosol, nucleus	24.39	15.54
CDY02519	Canola	nucleus	21.54	15.41
CDX75802	Canola	nucleus	24.8	15.1
CDX82453	Canola	nucleus	24.8	15.06
CDY60877	Canola	nucleus	21.14	14.53
CDY10772	Canola	nucleus	19.11	13.58
CDY10771	Canola	nucleus	19.11	13.54
CDY24724	Canola	nucleus	19.11	13.51
CDY55633	Canola	nucleus	20.73	13.35
CDY12633	Canola	nucleus	15.45	11.8
CDX96104	Canola	nucleus	16.67	11.68
CDY18525	Canola	nucleus	13.41	11.66
CDX95517	Canola	nucleus	13.41	11.66
CDY01793	Canola	nucleus	16.67	11.61
CDY33597	Canola	nucleus	15.04	11.46
CDY46042	Canola	nucleus	15.85	11.27
CDY45852	Canola	nucleus	15.04	11.14
CDY07432	Canola	nucleus	15.85	11.08
CDX81550	Canola	nucleus	15.04	10.95
CDY28898	Canola	nucleus	15.45	10.73
CDY62798	Canola	nucleus	14.23	8.52
CDY52898	Canola	nucleus	14.23	8.24
CDX82339	Canola	nucleus	13.82	8.02
CDX97627	Canola	mitochondrion	5.28	4.74
CDX78849	Canola	nucleus, plastid	2.44	2.51

Protein Annotations

EnsemblPlants:CDX78321	EnsemblPlantsGene:GSBRNA2T00129677001	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	PFAM:PF03634	PFscan:PS51369	ProteinID:CDX78321	ProteinID:CDX78321.1	SEG:seg
UniParc:UPI0004EEED59	MapMan:15.5.19	:	:	:	:

Description

BnaA03g02330D

Coordinates

chrLK031815:+:171828..172824

Molecular Weight (calculated)

27371.9 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.569

Length

246 amino acids

Sequence
(BLAST)

001: MRTNSMGIKQ EGDNQYQATS LSSLRQNPRI VRASRIFGGK DRHSKVCTVR GLRDRRIRLS ATTAIQLYDL QERLGLSQPS KVIDWLLEAA QNDVAMLPPL
101: QFPPGFHPNL AAAAAAGESF PGIFESFDLG SCSSRTDTTQ REGLNLESHG FDIDHHFFSN SNHRDKLYFP SSSSCHYNLG QLQQSLLDQS GNVTVALSNN
201: NNLNPQTVET MSSLFPRYPL FLEGGDHQLQ LFSSNSNSSK QTDHVE

Best Arabidopsis Sequence Match ( AT5G08070.1 )
(BLAST)

001: MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF
101: HQLNPNLTGL GESFPGVFDL GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ QSLLDQSGNV TVAFSNNYNN
201: NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH IE

Arabidopsis Description

TCP17Transcription factor TCP17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEZ9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.