Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004212.1-P | Field mustard | nucleus | 94.3 | 97.07 |
| CDY01793 | Canola | nucleus | 90.6 | 90.08 |
| CDY12633 | Canola | nucleus | 72.36 | 78.88 |
| CDY46042 | Canola | nucleus | 77.21 | 78.32 |
| CDY07432 | Canola | nucleus | 75.78 | 75.57 |
| CDY28898 | Canola | nucleus | 75.5 | 74.86 |
| AT1G67260.1 | Thale cress | nucleus | 72.08 | 70.47 |
| PGSC0003DMT400008673 | Potato | nucleus | 13.11 | 29.3 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.23 | 26.89 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.96 | 26.78 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 18.23 | 26.56 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 23.93 | 25.45 |
| KRH45185 | Soybean | plastid | 23.65 | 22.43 |
| KRH01497 | Soybean | plastid | 23.65 | 22.43 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 16.24 | 21.59 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 16.24 | 20.88 |
| CDY45852 | Canola | nucleus | 19.66 | 20.78 |
| CDY33597 | Canola | nucleus | 18.52 | 20.12 |
| CDX81550 | Canola | nucleus | 19.37 | 20.12 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 16.52 | 19.66 |
| CDY18525 | Canola | nucleus | 15.67 | 19.43 |
| CDY26285 | Canola | nucleus | 17.38 | 19.18 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 19.37 | 19.05 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 19.09 | 19.03 |
| KRG91334 | Soybean | nucleus | 20.23 | 18.93 |
| CDX99891 | Canola | nucleus | 17.09 | 18.93 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 19.09 | 18.93 |
| KRH18263 | Soybean | plastid | 22.51 | 18.85 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 18.8 | 18.75 |
| KRG93829 | Soybean | nucleus, plastid | 22.22 | 18.75 |
| CDX95517 | Canola | nucleus | 15.1 | 18.73 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 15.38 | 18.18 |
| CDY60877 | Canola | nucleus | 18.52 | 18.16 |
| KRH35497 | Soybean | nucleus | 19.37 | 17.89 |
| CDY59229 | Canola | nucleus | 15.95 | 17.89 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 16.81 | 17.88 |
| CDX90234 | Canola | nucleus | 15.67 | 17.86 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 18.52 | 17.76 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 19.09 | 17.63 |
| Zm00001d013467_P001 | Maize | nucleus | 17.66 | 17.27 |
| Os03t0706500-01 | Rice | nucleus | 18.8 | 17.01 |
| CDY01537 | Canola | nucleus | 14.81 | 16.94 |
| CDX81083 | Canola | nucleus, plastid | 11.68 | 16.8 |
| CDX78321 | Canola | nucleus, plastid | 11.68 | 16.67 |
| CDY55633 | Canola | nucleus | 17.38 | 15.97 |
| CDY20097 | Canola | nucleus | 15.95 | 15.69 |
| CDY02519 | Canola | nucleus | 15.1 | 15.41 |
| CDY68596 | Canola | cytosol, nucleus | 16.52 | 15.03 |
| CDX74272 | Canola | nucleus | 13.68 | 15.0 |
| CDX91977 | Canola | nucleus | 13.68 | 15.0 |
| CDY47005 | Canola | nucleus, plastid | 12.82 | 14.95 |
| CDY68618 | Canola | nucleus, plastid | 12.54 | 14.57 |
| CDX82453 | Canola | nucleus | 16.81 | 14.57 |
| CDX75802 | Canola | nucleus | 16.52 | 14.36 |
| CDY58696 | Canola | nucleus | 14.81 | 14.29 |
| CDY62798 | Canola | nucleus | 16.52 | 14.11 |
| CDY02180 | Canola | nucleus | 14.53 | 13.93 |
| CDY10772 | Canola | nucleus | 13.68 | 13.87 |
| CDY10771 | Canola | nucleus | 13.68 | 13.83 |
| CDY24724 | Canola | nucleus | 13.68 | 13.79 |
| CDX82339 | Canola | nucleus | 16.52 | 13.68 |
| CDY52898 | Canola | nucleus | 16.52 | 13.65 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 14.81 | 13.1 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 14.53 | 11.89 |
| CDX78849 | Canola | nucleus, plastid | 6.55 | 9.62 |
| CDX97627 | Canola | mitochondrion | 4.84 | 6.2 |
Protein Annotations
| EnsemblPlants:CDX96104 | EnsemblPlantsGene:GSBRNA2T00102152001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF41 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX96104 | ProteinID:CDX96104.1 | SEG:seg |
| UniParc:UPI0004EEDAE8 | MapMan:15.5.19 | : | : | : | : |
Description
BnaA07g26270D
Coordinates
chrLK031892:+:1067756..1068811
Molecular Weight (calculated)
39990.8 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.831
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNNDYIN GNNGVYPLSL YLSPLAGHQD IIRNPYNHQP TPSPGQMVSA VPESLMNYMS FSSNRAVNQQ GFKIHEVSRE IKKAVKKDRH SKIQTGQGLR
101: DRRVRLSIGI ARQFFDLQDM LGFDKASKTL DWLLKKSRRA IKELVQEKKL NNTDEDFGNI GGEVEEEEGD DGDKSFLYGS SPDSWEEEVA CEVKKAQKRN
201: KKIDLSNIFS KGSRAKARGK AKELTYDHPE TISEITQTET MDPLKRSIIS NEGEHMTHSL YKEATQEFDS QECILSKTKV NLPTNMDQIY NQNYGTFMLK
301: DQGSSSNYNN ILPQNLDFYY DQNSFIDQPF CAVTKTSFPR GNVWIQDSYL A
101: DRRVRLSIGI ARQFFDLQDM LGFDKASKTL DWLLKKSRRA IKELVQEKKL NNTDEDFGNI GGEVEEEEGD DGDKSFLYGS SPDSWEEEVA CEVKKAQKRN
201: KKIDLSNIFS KGSRAKARGK AKELTYDHPE TISEITQTET MDPLKRSIIS NEGEHMTHSL YKEATQEFDS QECILSKTKV NLPTNMDQIY NQNYGTFMLK
301: DQGSSSNYNN ILPQNLDFYY DQNSFIDQPF CAVTKTSFPR GNVWIQDSYL A
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.