Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G040100.1 | Wheat | nucleus | 95.76 | 96.31 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 95.48 | 96.02 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 89.55 | 88.8 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 62.15 | 57.89 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 59.04 | 57.1 |
| Os03t0706500-01 | Rice | nucleus | 61.02 | 55.67 |
| Zm00001d013467_P001 | Maize | nucleus | 56.21 | 55.43 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 36.16 | 43.39 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 18.93 | 32.84 |
| TraesCS5B01G205600.1 | Wheat | cytosol | 23.73 | 30.66 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 18.36 | 27.31 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 20.06 | 27.2 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.8 | 26.14 |
| PGSC0003DMT400010380 | Potato | nucleus | 20.06 | 25.45 |
| PGSC0003DMT400008673 | Potato | nucleus | 10.73 | 24.2 |
| Solyc03g045030.1.1 | Tomato | nucleus | 12.15 | 23.5 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 21.47 | 23.46 |
| CDX95517 | Canola | nucleus | 18.08 | 22.61 |
| CDY18525 | Canola | nucleus | 18.08 | 22.61 |
| CDY33597 | Canola | nucleus | 20.62 | 22.6 |
| Bra037579.1-P | Field mustard | nucleus | 18.08 | 22.46 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 20.62 | 22.12 |
| KRH03810 | Soybean | nucleus | 23.16 | 21.58 |
| KRH56692 | Soybean | nucleus | 22.88 | 21.54 |
| CDY45852 | Canola | nucleus | 20.06 | 21.39 |
| KRH45185 | Soybean | plastid | 22.32 | 21.35 |
| CDX81550 | Canola | nucleus | 20.34 | 21.3 |
| Bra038350.1-P | Field mustard | nucleus | 20.06 | 21.19 |
| KRH01497 | Soybean | plastid | 21.75 | 20.81 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 20.9 | 20.22 |
| CDY01793 | Canola | nucleus | 20.06 | 20.11 |
| Solyc06g069240.1.1 | Tomato | nucleus | 22.6 | 19.7 |
| CDY12633 | Canola | nucleus | 17.8 | 19.57 |
| Solyc04g006980.1.1 | Tomato | nucleus | 20.62 | 19.47 |
| PGSC0003DMT400019324 | Potato | nucleus | 20.9 | 19.42 |
| Solyc03g119770.2.1 | Tomato | nucleus | 18.93 | 19.36 |
| AT1G68800.2 | Thale cress | nucleus | 19.77 | 19.34 |
| KRH63057 | Soybean | nucleus | 20.9 | 19.22 |
| AT1G67260.1 | Thale cress | nucleus | 19.49 | 19.22 |
| CDX96104 | Canola | nucleus | 18.93 | 19.09 |
| CDY46042 | Canola | nucleus | 18.64 | 19.08 |
| Bra004212.1-P | Field mustard | nucleus | 18.36 | 19.06 |
| PGSC0003DMT400014572 | Potato | nucleus | 20.34 | 19.05 |
| KRG93829 | Soybean | nucleus, plastid | 22.03 | 18.75 |
| Bra034010.1-P | Field mustard | nucleus | 18.08 | 18.5 |
| KRH54810 | Soybean | nucleus | 20.62 | 18.43 |
| KRH35497 | Soybean | nucleus | 19.77 | 18.42 |
| KRG91334 | Soybean | nucleus | 19.49 | 18.4 |
| KRH18263 | Soybean | plastid | 21.75 | 18.38 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 22.6 | 18.26 |
| AT3G18550.3 | Thale cress | nucleus | 22.32 | 18.2 |
| CDX82339 | Canola | nucleus | 21.75 | 18.16 |
| Bra001710.1-P | Field mustard | nucleus | 21.75 | 18.12 |
| CDY52898 | Canola | nucleus | 21.75 | 18.12 |
| CDY62798 | Canola | nucleus | 20.9 | 18.0 |
| CDY07432 | Canola | nucleus | 17.8 | 17.9 |
| CDY28898 | Canola | nucleus | 17.51 | 17.51 |
| Bra004097.1-P | Field mustard | nucleus | 16.95 | 17.29 |
| Solyc05g009900.1.1 | Tomato | nucleus | 16.95 | 17.0 |
| PGSC0003DMT400002153 | Potato | nucleus | 16.67 | 16.67 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 16.95 | 14.15 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 16.1 | 14.11 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 10.73 | 13.57 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 16.67 | 13.11 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 11.02 | 13.0 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 9.6 | 11.04 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G042700.1 | EnsemblPlantsGene:TraesCS4B01G042700 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0048831 | InterPro:CYC/TB1_R_domain |
| InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr4B:+:30362277..30363341
Molecular Weight (calculated)
38249.8 Da
IEP (calculated)
8.004
GRAVY (calculated)
-0.663
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADSFHH SYLCAGAATP TPPAAEIDNQ SPPELLLMDQ APAPRADGVG TAQGLHGGGG
101: LDSAAAAAAR KDRHSKICTA GGMRDRRMRL SLDVARKFFA LQDMLGFDKA SKTVQWLLNT SKGAIREVMT DEASSDCEED GSSSLSVVDG KHKPPGTEAE
201: GGDHGEGKKQ VPRAARRAPA KPKPQRKLAS AHPIPDKESR TKARERARER TREKNRMRWV TLASTINIEP AATGMAAARA DEFVTRPNNL ISRSSSMNTA
301: RAELEEGCSS SMPSEAIMAG FGNGGYGSSG NYYQYQLEQQ WELGGVVFPN SQPY
101: LDSAAAAAAR KDRHSKICTA GGMRDRRMRL SLDVARKFFA LQDMLGFDKA SKTVQWLLNT SKGAIREVMT DEASSDCEED GSSSLSVVDG KHKPPGTEAE
201: GGDHGEGKKQ VPRAARRAPA KPKPQRKLAS AHPIPDKESR TKARERARER TREKNRMRWV TLASTINIEP AATGMAAARA DEFVTRPNNL ISRSSSMNTA
301: RAELEEGCSS SMPSEAIMAG FGNGGYGSSG NYYQYQLEQQ WELGGVVFPN SQPY
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.