Factsheet for TraesCS4D01G040100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G271300.1	Wheat	nucleus	96.31	96.31
TraesCS4B01G042700.1	Wheat	nucleus	96.31	95.76
HORVU4Hr1G007040.1	Barley	nucleus	90.34	89.08
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	62.5	57.89
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	59.09	56.83
Os03t0706500-01	Rice	nucleus	62.22	56.44
Zm00001d013467_P001	Maize	nucleus	55.97	54.87
TraesCS5D01G002300.1	Wheat	nucleus	35.23	46.97
TraesCS5D01G213400.1	Wheat	cytosol	23.86	30.55
TraesCS2D01G019300.1	Wheat	extracellular	19.32	28.81
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	18.47	27.31
GSMUA_Achr2P21050_001	Banana	mitochondrion	20.17	27.2
PGSC0003DMT400010380	Potato	nucleus	20.74	26.16
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	17.9	26.14
PGSC0003DMT400008673	Potato	nucleus	10.8	24.2
Solyc03g045030.1.1	Tomato	nucleus	12.22	23.5
GSMUA_Achr2P22480_001	Banana	cytosol	21.59	23.46
VIT_14s0083g00150.t01	Wine grape	nucleus	21.31	22.73
CDY33597	Canola	nucleus	20.45	22.29
CDX95517	Canola	nucleus	17.9	22.26
CDY18525	Canola	nucleus	17.9	22.26
Bra037579.1-P	Field mustard	nucleus	17.9	22.11
KRH45185	Soybean	plastid	22.73	21.62
CDY45852	Canola	nucleus	19.89	21.08
KRH01497	Soybean	plastid	22.16	21.08
CDX81550	Canola	nucleus	20.17	21.01
Bra038350.1-P	Field mustard	nucleus	19.89	20.9
KRH03810	Soybean	nucleus	22.44	20.79
KRH56692	Soybean	nucleus	22.16	20.74
Solyc06g069240.1.1	Tomato	nucleus	23.01	19.95
VIT_17s0000g04180.t01	Wine grape	nucleus	20.74	19.95
CDY01793	Canola	nucleus	19.89	19.83
CDY12633	Canola	nucleus	17.9	19.57
Solyc04g006980.1.1	Tomato	nucleus	20.74	19.47
PGSC0003DMT400019324	Potato	nucleus	21.02	19.42
Solyc03g119770.2.1	Tomato	nucleus	19.03	19.36
AT1G67260.1	Thale cress	nucleus	19.6	19.22
CDX96104	Canola	nucleus	19.03	19.09
CDY46042	Canola	nucleus	18.75	19.08
Bra004212.1-P	Field mustard	nucleus	18.47	19.06
AT1G68800.2	Thale cress	nucleus	19.6	19.06
PGSC0003DMT400014572	Potato	nucleus	20.45	19.05
KRG93829	Soybean	nucleus, plastid	22.16	18.75
KRH63057	Soybean	nucleus	20.45	18.7
KRH35497	Soybean	nucleus	20.17	18.68
KRG91334	Soybean	nucleus	19.89	18.67
Bra034010.1-P	Field mustard	nucleus	18.18	18.5
KRH18263	Soybean	plastid	21.88	18.38
CDX82339	Canola	nucleus	21.88	18.16
CDY52898	Canola	nucleus	21.88	18.12
Bra001710.1-P	Field mustard	nucleus	21.88	18.12
VIT_01s0011g02920.t01	Wine grape	nucleus	22.44	18.04
AT3G18550.3	Thale cress	nucleus	22.16	17.97
KRH54810	Soybean	nucleus	20.17	17.93
CDY07432	Canola	nucleus	17.9	17.9
CDY62798	Canola	nucleus	20.74	17.76
Solyc05g009900.1.1	Tomato	nucleus	17.61	17.56
CDY28898	Canola	nucleus	17.61	17.51
Bra004097.1-P	Field mustard	nucleus	17.05	17.29
PGSC0003DMT400002153	Potato	nucleus	17.05	16.95
TraesCS2D01G252100.1	Wheat	nucleus	17.9	15.14
TraesCS3D01G298900.1	Wheat	nucleus	11.08	14.18
TraesCS5D01G432500.1	Wheat	nucleus	15.91	13.97
TraesCS5D01G040100.1	Wheat	nucleus	11.36	13.56
TraesCS3D01G146900.1	Wheat	nucleus	16.19	12.56
TraesCS1D01G335300.1	Wheat	nucleus	9.38	10.54

Protein Annotations

EnsemblPlants:TraesCS4D01G040100.1	EnsemblPlantsGene:TraesCS4D01G040100	GO:GO:0007275	GO:GO:0008150	GO:GO:0048831	InterPro:CYC/TB1_R_domain
InterPro:IPR017887	InterPro:IPR017888	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072	PANTHER:PTHR31072:SF39
PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	SEG:seg	MapMan:15.5.19	:

Description

No Description!

Coordinates

chr4D:+:18464255..18465313

Molecular Weight (calculated)

37861.4 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.641

Length

352 amino acids

Sequence
(BLAST)

001: MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADAFHH SYLCAGAATP PAAEIDNQPP PELLLMDQAP APRADGVGTA QGLRGGGGLD
101: SAAAAAARKD RHSKICTAGG MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLDTSK GAIREVMTDE ASSDCEEDGS SSLSVVDGKH KPPGTEAGGG
201: DHGEGKKPVP RAARRAPANP KPQRKLASAH PIPDKESRTK ARERARERTR EKNRMRWVTL ASTINIEPAA TGMAAARAGE LVTNPNNLIN RSSSMNTSRA
301: ELEEGCSSSM PSEAIMAGFG NGGYGSSGNY YQYQLEQQWE LGGVVFTNSQ PY

Best Arabidopsis Sequence Match ( AT3G18550.2 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.