Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G271300.1 | Wheat | nucleus | 56.7 | 62.5 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 56.44 | 62.22 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 60.57 | 61.84 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 55.67 | 61.02 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 57.47 | 60.93 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 55.93 | 60.78 |
| Zm00001d013467_P001 | Maize | nucleus | 54.64 | 59.05 |
| Os09t0410500-00 | Rice | nucleus | 22.16 | 31.85 |
| Os08t0432300-00 | Rice | nucleus | 21.39 | 28.04 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 17.01 | 27.73 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 16.49 | 26.56 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 17.53 | 26.05 |
| PGSC0003DMT400010380 | Potato | nucleus | 18.56 | 25.81 |
| PGSC0003DMT400008673 | Potato | nucleus | 10.31 | 25.48 |
| Solyc03g045030.1.1 | Tomato | nucleus | 11.6 | 24.59 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 19.59 | 23.46 |
| CDX95517 | Canola | nucleus | 17.01 | 23.32 |
| CDY18525 | Canola | nucleus | 17.01 | 23.32 |
| Bra037579.1-P | Field mustard | nucleus | 17.01 | 23.16 |
| CDY45852 | Canola | nucleus | 18.81 | 21.99 |
| CDX81550 | Canola | nucleus | 19.07 | 21.89 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 18.56 | 21.82 |
| Bra038350.1-P | Field mustard | nucleus | 18.81 | 21.79 |
| CDY33597 | Canola | nucleus | 18.04 | 21.67 |
| KRH03810 | Soybean | nucleus | 20.88 | 21.32 |
| KRH56692 | Soybean | nucleus | 20.62 | 21.28 |
| CDY12633 | Canola | nucleus | 16.49 | 19.88 |
| KRH63057 | Soybean | nucleus | 19.59 | 19.74 |
| KRH45185 | Soybean | plastid | 18.81 | 19.73 |
| Solyc06g069240.1.1 | Tomato | nucleus | 20.62 | 19.7 |
| Solyc04g006980.1.1 | Tomato | nucleus | 18.81 | 19.47 |
| KRH01497 | Soybean | plastid | 18.56 | 19.46 |
| PGSC0003DMT400014572 | Potato | nucleus | 18.81 | 19.31 |
| AT1G67260.1 | Thale cress | nucleus | 17.78 | 19.22 |
| PGSC0003DMT400019324 | Potato | nucleus | 18.81 | 19.16 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 18.04 | 19.13 |
| Bra034010.1-P | Field mustard | nucleus | 17.01 | 19.08 |
| Solyc03g119770.2.1 | Tomato | nucleus | 17.01 | 19.08 |
| CDY01793 | Canola | nucleus | 17.27 | 18.98 |
| KRH54810 | Soybean | nucleus | 19.33 | 18.94 |
| CDX96104 | Canola | nucleus | 17.01 | 18.8 |
| CDY46042 | Canola | nucleus | 16.75 | 18.79 |
| Bra004212.1-P | Field mustard | nucleus | 16.49 | 18.77 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 20.62 | 18.26 |
| AT1G68800.2 | Thale cress | nucleus | 17.01 | 18.23 |
| CDY07432 | Canola | nucleus | 16.49 | 18.18 |
| KRG91334 | Soybean | nucleus | 17.27 | 17.87 |
| CDY28898 | Canola | nucleus | 16.24 | 17.8 |
| KRG93829 | Soybean | nucleus, plastid | 19.07 | 17.79 |
| Bra004097.1-P | Field mustard | nucleus | 15.72 | 17.58 |
| Solyc05g009900.1.1 | Tomato | nucleus | 15.98 | 17.56 |
| CDY62798 | Canola | nucleus | 18.56 | 17.52 |
| AT3G18550.3 | Thale cress | nucleus | 19.59 | 17.51 |
| CDX82339 | Canola | nucleus | 19.07 | 17.45 |
| Bra001710.1-P | Field mustard | nucleus | 19.07 | 17.41 |
| KRH18263 | Soybean | plastid | 18.56 | 17.18 |
| KRH35497 | Soybean | nucleus | 16.75 | 17.11 |
| CDY52898 | Canola | nucleus | 18.3 | 16.71 |
| PGSC0003DMT400002153 | Potato | nucleus | 14.95 | 16.38 |
| Os07t0152000-01 | Rice | nucleus | 16.49 | 14.38 |
| Os05t0513100-01 | Rice | nucleus | 10.82 | 14.29 |
| Os01t0763200-01 | Rice | cytosol | 11.08 | 14.01 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 15.21 | 13.23 |
| Os03t0785800-01 | Rice | nucleus | 12.11 | 13.17 |
| Os01t0213800-01 | Rice | mitochondrion | 14.69 | 9.84 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 1.55 | 2.88 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:4333856 | ProteinID:AAK37505.1 | ProteinID:AAM97162.1 | ProteinID:ABF98462.1 | EMBL:AK107083 |
| EMBL:AY043215 | ProteinID:BAC54954.1 | ProteinID:BAF12942.1 | ProteinID:BAS85980.1 | InterPro:CYC/TB1_R_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0048831 |
| InterPro:IPR017887 | InterPro:IPR017888 | EMBL:JQ315157 | EnsemblPlantsGene:Os03g0706500 | EnsemblPlants:Os03t0706500-01 | PFAM:PF03634 |
| PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF39 | UniProt:Q8LN68 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00000020DB | RefSeq:XP_015630237.1 | SEG:seg | : | : |
Description
FINE CULM 1TCP family transcription factor, Negative regulator for lateral branching (Os03t0706500-01)
Coordinates
chr3:+:28428504..28430438
Molecular Weight (calculated)
41506.1 Da
IEP (calculated)
7.426
GRAVY (calculated)
-0.706
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA TIASPSPAMH PFMDLELEPH GQQLAAAEED GAGGQGVDAG
101: VPFGVDGAAA AAAARKDRHS KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS VCEEDGSSSL SVDGKQQQHS
201: NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS
301: NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS GSYYLQQQHQ QDQWELGGVV YANSRHYC
101: VPFGVDGAAA AAAARKDRHS KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS VCEEDGSSSL SVDGKQQQHS
201: NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS
301: NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS GSYYLQQQHQ QDQWELGGVV YANSRHYC
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.