CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001710.1-P	Field mustard	nucleus	99.76	99.53
CDY52898	Canola	nucleus	92.69	92.47
CDY62798	Canola	nucleus	74.06	76.4
CDY18525	Canola	nucleus	48.82	73.14
CDX95517	Canola	nucleus	48.11	72.08
AT3G18550.3	Thale cress	nucleus	70.75	69.12
PGSC0003DMT400010380	Potato	nucleus	16.98	25.81
TraesCS5A01G001900.1	Wheat	nucleus	16.04	24.91
TraesCS5B01G002300.1	Wheat	nucleus	16.27	23.39
CDY45852	Canola	nucleus	18.16	23.19
TraesCS5D01G002300.1	Wheat	nucleus	14.39	23.11
CDX81550	Canola	nucleus	18.4	23.08
VIT_17s0000g04180.t01	Wine grape	nucleus	19.58	22.68
CDY33597	Canola	nucleus	17.22	22.6
Solyc03g119770.2.1	Tomato	nucleus	18.4	22.54
HORVU5Hr1G000490.1	Barley	nucleus	15.57	22.22
KRH03810	Soybean	nucleus	19.81	22.11
KRH56692	Soybean	nucleus	19.58	22.07
TraesCS4A01G271300.1	Wheat	nucleus	18.16	21.88
TraesCS4D01G040100.1	Wheat	nucleus	18.16	21.88
TraesCS4B01G042700.1	Wheat	nucleus	18.16	21.75
KRH63057	Soybean	nucleus	19.58	21.56
Solyc06g069240.1.1	Tomato	nucleus	20.05	20.94
HORVU4Hr1G007040.1	Barley	nucleus	17.45	20.73
PGSC0003DMT400014572	Potato	nucleus	18.4	20.63
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.45	20.22
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	17.92	20.0
Zm00001d013467_P001	Maize	nucleus	16.75	19.78
KRH54810	Soybean	nucleus	18.4	19.7
Os03t0706500-01	Rice	nucleus	17.45	19.07
CDY12633	Canola	nucleus	12.97	17.08
CDY01793	Canola	nucleus	14.15	17.0
CDX96104	Canola	nucleus	13.68	16.52
CDY46042	Canola	nucleus	13.44	16.47
CDX99891	Canola	nucleus	12.26	16.4
CDY26285	Canola	nucleus	12.03	16.04
CDY07432	Canola	nucleus	13.21	15.91
CDY28898	Canola	nucleus	13.21	15.82
CDY59229	Canola	nucleus	11.08	15.02
CDX81083	Canola	nucleus, plastid	8.49	14.75
CDX90234	Canola	nucleus	10.61	14.61
CDY60877	Canola	nucleus	12.26	14.53
CDX74272	Canola	nucleus	10.85	14.38
CDX91977	Canola	nucleus	10.85	14.38
CDY01537	Canola	nucleus	10.14	14.01
CDX78321	Canola	nucleus, plastid	8.02	13.82
CDY55633	Canola	nucleus	11.56	12.83
CDY58696	Canola	nucleus	10.85	12.64
CDY47005	Canola	nucleus, plastid	8.73	12.29
CDY68618	Canola	nucleus, plastid	8.73	12.25
CDY02180	Canola	nucleus	10.38	12.02
CDY68596	Canola	cytosol, nucleus	10.38	11.4
CDY60475	Canola	endoplasmic reticulum, golgi	10.61	11.34
CDY20097	Canola	nucleus	9.43	11.2
CDY02519	Canola	nucleus	8.96	11.05
CDY10771	Canola	nucleus	8.96	10.95
CDY24724	Canola	nucleus	8.96	10.92
CDX75802	Canola	nucleus	10.38	10.89
CDX82453	Canola	nucleus	10.38	10.86
CDY43255	Canola	endoplasmic reticulum, golgi	10.85	10.72
CDY10772	Canola	nucleus	8.73	10.69
CDX78849	Canola	nucleus, plastid	4.01	7.11
CDX97627	Canola	mitochondrion	1.65	2.55

Protein Annotations

EnsemblPlants:CDX82339	EnsemblPlantsGene:GSBRNA2T00137457001	InterPro:CYC/TB1_R_domain	InterPro:IPR017887	InterPro:IPR017888	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
ProteinID:CDX82339	ProteinID:CDX82339.1	SEG:seg	UniParc:UPI0004EE8AC5	MapMan:15.5.19	:

Description

BnaA03g34820D

Coordinates

chrLK031828:-:673466..675247

Molecular Weight (calculated)

48330.8 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.854

Length

424 amino acids

Sequence
(BLAST)

001: MNNRSFSTTT TISEDYMLFP YNDHYSSQPL LPFNPCSSIN DILIHSNSNI SSNPLDHHYQ FLQAPSSFSQ FEFVPDFALV ASFLPQNNGH NDNQTITTND
101: HNNNHHHHHP SLLPLNNPIG ESLVEPLETI ATHIEDSQRI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV AKELFGLQDM LGFDKASKTV
201: EWLLTQAKPE IIKITSSLSN PLNHGGFSSC EESQTRPALG SMHTSSDLCK LSSMGTVEDR GSNTNSTETR GNKVDGRSMR GKRKMLQART PILKKLSKDE
301: RAKARERAKD RTKEKLMKRR SQVTVLDAEA HNQHDEIVKN NKSHVNCKSF EATPCQEETE ELLCKNDGFA VCNEFVVNKF NSSFPMPNHH RSQGTVSSIE
401: QRQFMDLHHF LERPRDLMYN YHNM

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.