CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12633	Canola	nucleus	88.73	95.34
CDY01793	Canola	nucleus	80.06	78.47
CDX96104	Canola	nucleus	78.32	77.21
CDY07432	Canola	nucleus	75.14	73.86
CDY28898	Canola	nucleus	74.57	72.88
AT1G67260.1	Thale cress	nucleus	72.54	69.92
PGSC0003DMT400008673	Potato	nucleus	13.29	29.3
Solyc03g045030.1.1	Tomato	nucleus	13.87	26.23
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	17.92	26.05
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	17.92	25.73
VIT_14s0083g00150.t01	Wine grape	nucleus	22.25	23.33
TraesCS5D01G002300.1	Wheat	nucleus	16.76	21.97
TraesCS5A01G001900.1	Wheat	nucleus	16.76	21.25
KRH45185	Soybean	plastid	21.97	20.54
KRH01497	Soybean	plastid	21.68	20.27
TraesCS5B01G002300.1	Wheat	nucleus	17.05	20.0
CDY33597	Canola	nucleus	18.21	19.5
CDY18525	Canola	nucleus	15.61	19.08
CDX95517	Canola	nucleus	15.61	19.08
HORVU5Hr1G000490.1	Barley	nucleus	16.18	18.86
TraesCS4D01G040100.1	Wheat	nucleus	19.08	18.75
CDY45852	Canola	nucleus	17.92	18.67
TraesCS4B01G042700.1	Wheat	nucleus	19.08	18.64
HORVU4Hr1G007040.1	Barley	nucleus	19.08	18.49
TraesCS4A01G271300.1	Wheat	nucleus	18.79	18.47
CDX99891	Canola	nucleus	16.76	18.3
KRG91334	Soybean	nucleus	19.65	18.13
CDX81550	Canola	nucleus	17.63	18.05
CDY26285	Canola	nucleus	16.47	17.92
KRH35497	Soybean	nucleus	19.36	17.63
CDY60877	Canola	nucleus	18.21	17.6
KRH18263	Soybean	plastid	21.1	17.42
KRG93829	Soybean	nucleus, plastid	20.81	17.31
Os03t0706500-01	Rice	nucleus	18.79	16.75
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.63	16.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	15.9	16.67
CDY59229	Canola	nucleus	15.03	16.61
CDY01537	Canola	nucleus	14.74	16.61
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	18.21	16.58
CDX90234	Canola	nucleus	14.74	16.56
Zm00001d013467_P001	Maize	nucleus	16.76	16.16
CDX81083	Canola	nucleus, plastid	11.27	15.98
CDX78321	Canola	nucleus, plastid	11.27	15.85
CDY55633	Canola	nucleus	17.05	15.45
CDY20097	Canola	nucleus	15.9	15.41
CDX74272	Canola	nucleus	14.16	15.31
CDX91977	Canola	nucleus	14.16	15.31
CDY02519	Canola	nucleus	15.03	15.12
CDX82453	Canola	nucleus	17.05	14.57
CDY68596	Canola	cytosol, nucleus	16.18	14.51
CDX75802	Canola	nucleus	16.76	14.36
CDY47005	Canola	nucleus, plastid	12.14	13.95
CDY68618	Canola	nucleus, plastid	11.85	13.58
CDX82339	Canola	nucleus	16.47	13.44
CDY52898	Canola	nucleus	16.47	13.41
CDY10772	Canola	nucleus	13.29	13.29
CDY10771	Canola	nucleus	13.29	13.26
CDY24724	Canola	nucleus	13.29	13.22
CDY58696	Canola	nucleus	13.87	13.19
CDY62798	Canola	nucleus	15.61	13.14
CDY02180	Canola	nucleus	13.58	12.84
CDY60475	Canola	endoplasmic reticulum, golgi	13.58	11.84
CDY43255	Canola	endoplasmic reticulum, golgi	14.16	11.42
CDX78849	Canola	nucleus, plastid	6.65	9.62
CDX97627	Canola	mitochondrion	4.34	5.47

Protein Annotations

MapMan:15.5.19	UniProt:A0A078I7I4	EnsemblPlants:CDY46042	ProteinID:CDY46042	ProteinID:CDY46042.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00083170001	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0004EE2607	SEG:seg

Description

BnaC02g17320DBnaC02g17320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7I4]

Coordinates

chrLK032647:-:154971..156011

Molecular Weight (calculated)

39431.8 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.865

Length

346 amino acids

Sequence
(BLAST)

001: MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASLGQMVSA VPESLIDYMS FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIHTAQGLR
101: DRRVRLSIGV ARQFFDLQDM LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDEDFRNN RGDVEEDEDD GDKSFVYGSS PDSCEEVVYE VKKTEKSNIS
201: SKGLMDKARG KSKQITREMT YDHPEAVSEI TQTEIMDPFK MSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDRSYNQHYG TCMSKNQGSS
301: SNYNTILPQN LDYGYDQNPF MDQPFCAVTN RNFPRGKVWV QDSSLA

Best Arabidopsis Sequence Match ( AT1G67260.1 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.