Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01497 | Soybean | plastid | 40.3 | 35.95 |
| KRH45185 | Soybean | plastid | 40.0 | 35.68 |
| KRH18263 | Soybean | plastid | 43.03 | 33.89 |
| KRG93829 | Soybean | nucleus, plastid | 41.82 | 33.17 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 23.03 | 31.54 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 22.73 | 31.51 |
| KRG91334 | Soybean | nucleus | 33.94 | 29.87 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 32.73 | 29.51 |
| VIT_01s0011g02920.t01 | Wine grape | nucleus | 39.09 | 29.45 |
| KRH35497 | Soybean | nucleus | 32.73 | 28.42 |
| PGSC0003DMT400008673 | Potato | nucleus | 13.03 | 27.39 |
| Solyc03g045030.1.1 | Tomato | nucleus | 14.55 | 26.23 |
| Bra004212.1-P | Field mustard | nucleus | 25.45 | 24.63 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 24.55 | 24.55 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 19.39 | 24.24 |
| CDY12633 | Canola | nucleus | 23.64 | 24.22 |
| CDY01793 | Canola | nucleus | 25.76 | 24.08 |
| CDX96104 | Canola | nucleus | 25.45 | 23.93 |
| CDY28898 | Canola | nucleus | 25.15 | 23.45 |
| Bra034010.1-P | Field mustard | nucleus | 24.55 | 23.41 |
| CDY07432 | Canola | nucleus | 24.85 | 23.3 |
| Bra004097.1-P | Field mustard | nucleus | 24.24 | 23.05 |
| AT1G67260.1 | Thale cress | nucleus | 24.85 | 22.84 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 18.79 | 22.71 |
| CDY46042 | Canola | nucleus | 23.33 | 22.25 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 19.09 | 21.36 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 22.73 | 21.31 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 23.03 | 21.29 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 18.79 | 20.88 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 22.12 | 20.74 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 22.12 | 20.62 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 22.12 | 19.21 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 21.21 | 19.13 |
| Os03t0706500-01 | Rice | nucleus | 21.82 | 18.56 |
| Zm00001d013467_P001 | Maize | nucleus | 19.7 | 18.11 |
| VIT_14s0068g00330.t01 | Wine grape | nucleus | 16.97 | 16.05 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 14.55 | 15.64 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 20.0 | 14.86 |
| VIT_10s0003g00870.t01 | Wine grape | nucleus | 15.15 | 13.09 |
| VIT_19s0014g01680.t01 | Wine grape | nucleus | 15.15 | 12.56 |
Protein Annotations
| MapMan:15.5.19 | EMBL:AM464158 | ProteinID:CAN83383 | ProteinID:CAN83383.1 | ProteinID:CCB44043 | ProteinID:CCB44043.1 |
| InterPro:CYC/TB1_R_domain | UniProt:F6GVQ8 | EMBL:FN594955 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | InterPro:IPR017888 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF18 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000210866F | ArrayExpress:VIT_14s0083g00150 | EnsemblPlantsGene:VIT_14s0083g00150 |
| EnsemblPlants:VIT_14s0083g00150.t01 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:22124586..22125983
Molecular Weight (calculated)
37700.1 Da
IEP (calculated)
10.496
GRAVY (calculated)
-0.756
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSNNPIMT NQDVGRINQD YYGPSNFLPG KRAVKKDRHS KITTAKGPRE RRVRLSIKIA RKFFDLQDML GFDKASRTLE WLLMKSKTAI KEVVRMKHSC
101: NEEAKSLSSA SECEVVSEMN DAAESGDPQE ILFRRKSPGW VSKEKKMKES NKAAFHLLAR ESRAKARARA RERTREKMCT RRLDELKKFP DANHPILSQL
201: RSSCQFQTHE KLGSHTHNMA SSLKLVGQVE ESSSRPLANH TQREDIIEES IVIKRKLKPS PIFACPQNLL FSKDLSLGNS NSYFPHPPQN WDINTPSARS
301: SFCAMTNMNL STEFQVFGKP WEAYNNLSLR
101: NEEAKSLSSA SECEVVSEMN DAAESGDPQE ILFRRKSPGW VSKEKKMKES NKAAFHLLAR ESRAKARARA RERTREKMCT RRLDELKKFP DANHPILSQL
201: RSSCQFQTHE KLGSHTHNMA SSLKLVGQVE ESSSRPLANH TQREDIIEES IVIKRKLKPS PIFACPQNLL FSKDLSLGNS NSYFPHPPQN WDINTPSARS
301: SFCAMTNMNL STEFQVFGKP WEAYNNLSLR
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.