CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18263	Soybean	plastid	92.79	92.12
KRH45185	Soybean	plastid	58.41	65.68
KRH01497	Soybean	plastid	57.45	64.59
KRH35497	Soybean	nucleus	43.27	47.37
KRG91334	Soybean	nucleus	42.31	46.93
VIT_14s0083g00150.t01	Wine grape	nucleus	33.17	41.82
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	20.67	36.13
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	20.43	35.27
PGSC0003DMT400008673	Potato	nucleus	13.22	35.03
Solyc03g045030.1.1	Tomato	nucleus	13.7	31.15
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	21.39	26.97
KRH03810	Soybean	nucleus	22.84	25.0
TraesCS5D01G002300.1	Wheat	nucleus	15.62	24.62
KRH56692	Soybean	nucleus	22.12	24.47
TraesCS5A01G001900.1	Wheat	nucleus	15.62	23.81
KRH63057	Soybean	nucleus	21.88	23.64
KRH54810	Soybean	nucleus	22.12	23.23
CDY01793	Canola	nucleus	19.47	22.95
Bra004212.1-P	Field mustard	nucleus	18.75	22.87
HORVU4Hr1G007040.1	Barley	nucleus	19.23	22.41
TraesCS5B01G002300.1	Wheat	nucleus	15.87	22.37
CDX96104	Canola	nucleus	18.75	22.22
Bra004097.1-P	Field mustard	nucleus	18.51	22.19
TraesCS4D01G040100.1	Wheat	nucleus	18.75	22.16
CDY07432	Canola	nucleus	18.75	22.16
CDY12633	Canola	nucleus	17.07	22.05
CDY28898	Canola	nucleus	18.75	22.03
TraesCS4B01G042700.1	Wheat	nucleus	18.75	22.03
TraesCS4A01G271300.1	Wheat	nucleus	18.51	21.88
AT1G67260.1	Thale cress	nucleus	18.51	21.45
Bra034010.1-P	Field mustard	nucleus	17.79	21.39
HORVU5Hr1G000490.1	Barley	nucleus	15.14	21.21
CDY46042	Canola	nucleus	17.31	20.81
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	18.27	20.77
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	18.51	20.26
Zm00001d013467_P001	Maize	nucleus	16.83	19.5
Os03t0706500-01	Rice	nucleus	17.79	19.07
KRH27017	Soybean	nucleus	12.02	14.58
KRH22307	Soybean	nucleus	12.02	14.53
KRH11155	Soybean	nucleus	16.83	13.7
KRH27317	Soybean	nucleus	12.26	13.53
KRH45058	Soybean	nucleus	11.54	13.52
KRH42567	Soybean	nucleus	15.14	13.46
KRH25697	Soybean	nucleus	9.38	13.4
KRH58674	Soybean	nucleus	15.38	13.39
KRG93654	Soybean	nucleus	12.02	13.37
KRH21093	Soybean	nucleus	17.07	13.35
KRH26201	Soybean	nucleus	12.26	12.85
KRH55125	Soybean	nucleus	11.78	12.53
KRH63215	Soybean	nucleus, plastid	11.54	12.4
KRH01308	Soybean	cytosol	11.3	12.24
KRH55819	Soybean	nucleus	9.62	12.01
KRH21998	Soybean	nucleus	11.3	11.96
KRH54711	Soybean	plastid	11.06	11.79
KRH03150	Soybean	nucleus, plastid	10.34	11.05
KRH56798	Soybean	nucleus	10.34	11.0

Protein Annotations

EntrezGene:100791288	MapMan:15.5.19	EMBL:ACUP02011630	InterPro:CYC/TB1_R_domain	EnsemblPlantsGene:GLYMA_19G044400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	UniProt:K7MWI6	EnsemblPlants:KRG93829
ProteinID:KRG93829	ProteinID:KRG93829.1	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072
PANTHER:PTHR31072:SF18	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000233EA56	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:6584768..6586927

Molecular Weight (calculated)

46432.3 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.871

Length

416 amino acids

Sequence
(BLAST)

001: MFPYSSNPYP SFPSSSSSSY PPFPFLNLEN ASASNTLLHD PLSVPYIPTH HHNPSSIQEA LNNLPVTDHN CGGGGGSAMT KPDSNGGGAP HYGISCFLTK
101: KPPKKDRHSK IYTSQGLRDR RVRLSIAIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS SSSDCDDDCE VVSEIKQKQQ
201: QLITCDAATT QHNLQQGLDS GDNKSPTTLV AARERMKLKR TQKEPAKIKE SREKARARAR ERTSNKIIMC NVNTNNNNTG RRVQQQDLKK KCPAIENNHS
301: QIMHQSSSSP THNLVGNETP RDDFNVIEES IVIKRKLKPS LMSSSHHHHH HHQSLMIPKE PPSFNNCEYH PFSNLSPNWD ANGSTGRSNF CAVASMNLST
401: GLQIFGKSWE ECINPR

Best Arabidopsis Sequence Match ( AT1G67260.3 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.