CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63215	Soybean	nucleus, plastid	90.51	91.21
KRH03150	Soybean	nucleus, plastid	50.51	50.64
KRH56798	Soybean	nucleus	49.23	49.1
Solyc03g115010.1.1	Tomato	plastid	35.64	40.76
PGSC0003DMT400063327	Potato	nucleus, plastid	35.64	40.41
KRH45058	Soybean	nucleus	35.9	39.44
KRH01308	Soybean	cytosol	35.9	36.46
GSMUA_Achr4P32850_001	Banana	nucleus	30.77	34.99
KRG93654	Soybean	nucleus	33.33	34.76
GSMUA_Achr6P27420_001	Banana	nucleus	26.15	34.11
KRH27017	Soybean	nucleus	17.95	20.41
KRH22307	Soybean	nucleus	17.95	20.35
KRH27317	Soybean	nucleus	19.49	20.16
KRH25697	Soybean	nucleus	14.87	19.93
KRH21998	Soybean	nucleus	19.74	19.59
KRH55125	Soybean	nucleus	19.49	19.44
KRH55819	Soybean	nucleus	16.15	18.92
KRH26201	Soybean	nucleus	19.23	18.89
KRH42567	Soybean	nucleus	21.79	18.16
KRH58674	Soybean	nucleus	21.79	17.78
KRH11155	Soybean	nucleus	20.77	15.85
KRH21093	Soybean	nucleus	20.77	15.23
KRH01497	Soybean	plastid	14.36	15.14
KRH45185	Soybean	plastid	13.85	14.59
KRH56692	Soybean	nucleus	13.59	14.1
KRH63057	Soybean	nucleus	12.82	12.99
KRH03810	Soybean	nucleus	12.31	12.63
KRH54810	Soybean	nucleus	12.31	12.12
KRH18263	Soybean	plastid	12.31	11.46
KRG93829	Soybean	nucleus, plastid	11.79	11.06
KRG91334	Soybean	nucleus	10.26	10.67
KRH35497	Soybean	nucleus	10.26	10.53

Protein Annotations

EntrezGene:100804574	MapMan:15.5.19	EMBL:ACUP02003567	EnsemblPlantsGene:GLYMA_06G204300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1KD23	InterPro:IPR017887	EnsemblPlants:KRH54711	ProteinID:KRH54711	ProteinID:KRH54711.1
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF24	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI00029529E4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:19210263..19213125

Molecular Weight (calculated)

43115.4 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.591

Length

390 amino acids

Sequence
(BLAST)

001: MMLTMMASSR EGYQAKQEGD TTTNIDKFSK ASSTTSRQWS AFRNPRIVRV SRSFGGKDRH SKVCTIRGLR DRRIRLSVPT AIQLYDLQDK LGLSQPSKVI
101: DWLLEATKFD IDKLPPLQFP QGFGQFHHHP QTLFPFHESS AASHQLSLGP FSDASSTFVR DGGIQNLMAK SRYWENINSM SRLRGNKEAE KGKWIKTSEE
201: ENHDQDGVVG GYNNLQVSTQ RLFPMGSSTT TTTHSLLPGL LNNSMPYNAY SSEPSSLSLS QFGSHGLFPS QQVDPNPSSG NNGVQFQSSL SLPSSGSQLL
301: FGSSSATPSM FTTYAPFIAP SVDPDPRQFN HIHQFLNSGS QILPPHPLIP SLHHPFNSQI RPFPAALFSS KLLDSDSSNH SQQDHKGSTS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.