Factsheet for GSMUA_Achr6P27420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32850_001	Banana	nucleus	33.11	28.86
CDX81083	Canola	nucleus, plastid	23.41	28.69
Bra005967.1-P	Field mustard	nucleus, plastid	23.41	28.46
CDX78321	Canola	nucleus, plastid	23.41	28.46
Solyc06g069460.1.1	Tomato	plastid	26.42	28.42
AT5G08070.1	Thale cress	nucleus, plastid	22.74	28.1
Solyc03g115010.1.1	Tomato	plastid	30.77	26.98
PGSC0003DMT400063327	Potato	nucleus, plastid	30.77	26.74
PGSC0003DMT400010453	Potato	nucleus, plastid	27.09	26.56
KRH63215	Soybean	nucleus, plastid	34.11	26.36
KRH54711	Soybean	plastid	34.11	26.15
Bra029344.1-P	Field mustard	nucleus, plastid	24.75	24.58
CDY47005	Canola	nucleus, plastid	24.75	24.58
KRH56798	Soybean	nucleus	32.11	24.55
KRH03150	Soybean	nucleus, plastid	31.77	24.42
CDY68618	Canola	nucleus, plastid	24.41	24.17
AT5G60970.1	Thale cress	nucleus	28.43	23.61
GSMUA_Achr8P19990_001	Banana	nucleus	18.06	22.41
CDY58696	Canola	nucleus	27.09	22.25
Bra012990.1-P	Field mustard	nucleus	27.09	22.13
CDY02180	Canola	nucleus	27.09	22.13
GSMUA_Achr6P14430_001	Banana	nucleus	17.39	21.67
GSMUA_Achr10P...	Banana	nucleus	17.73	21.29
GSMUA_Achr3P31370_001	Banana	nucleus	17.73	20.31
GSMUA_Achr10P...	Banana	nucleus	16.72	18.87
GSMUA_Achr4P22960_001	Banana	nucleus	22.41	17.54
GSMUA_Achr4P31520_001	Banana	nucleus	21.74	17.11
GSMUA_Achr7P01160_001	Banana	nucleus	21.74	17.02
GSMUA_Achr2P12990_001	Banana	nucleus	21.4	16.93
GSMUA_Achr7P13980_001	Banana	nucleus	20.4	16.58
GSMUA_Achr5P02530_001	Banana	nucleus	21.07	16.49
GSMUA_Achr3P03540_001	Banana	nucleus	20.07	14.93
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	19.73	12.53
GSMUA_Achr2P21050_001	Banana	mitochondrion	10.7	12.26
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	13.04	11.82
GSMUA_Achr2P22480_001	Banana	cytosol	12.37	11.42

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G27420_001	EnsemblPlants:GSMUA_Achr6P27420_001
EnsemblPlants:GSMUA_Achr6T27420_001	InterPro:IPR017887	UniProt:M0TAN7	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000294F464	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G27420_001]

Coordinates

chr6:-:27947967..27949111

Molecular Weight (calculated)

33143.7 Da

IEP (calculated)

7.690

GRAVY (calculated)

-0.638

Length

299 amino acids

Sequence
(BLAST)

001: MIRSSREEGE FTGQDVGTSE SKAQPSLRSW TAHNNPRIVR VSRTFGGKDR HSKVTTIRGL RDRRVRLSVP TAIQLYDLQD KLGFNQPSKV VDWLLSAAQH
101: EIDKLPPLEM LPGNLFRFPQ PVANSHVTGS AQAYSGNAVG DDDEYTHRDK AQRLASSSSL ATEDIFNSNV AEGTSMMPKA VNLDVLPRSK EKEALKDHGV
201: VLGNSAITYN PYYHLETPNA YSYDHSEVPH GHHPVAILAS YMAAASKVET QQYSHLQMAS SESSANALRT SLHAAIPNLM VLHKRNTASE HHHQDHHQT

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.