Factsheet for GSMUA_Achr10P01020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	72.29	74.69
GSMUA_Achr6P14430_001	Banana	nucleus	50.2	52.08
GSMUA_Achr3P31370_001	Banana	nucleus	46.18	44.06
GSMUA_Achr7P13980_001	Banana	nucleus	63.86	43.21
GSMUA_Achr3P03540_001	Banana	nucleus	67.07	41.54
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	76.71	40.55
GSMUA_Achr10P...	Banana	nucleus	40.96	38.49
TraesCS3B01G164500.1	Wheat	nucleus	54.22	30.0
Zm00001d008919_P001	Maize	nucleus, plastid	51.0	29.88
TraesCS3D01G146900.1	Wheat	nucleus	54.22	29.74
TraesCS3A01G140100.1	Wheat	nucleus	54.22	29.54
Os01t0213800-01	Rice	mitochondrion	55.42	23.83
Zm00001d039371_P001	Maize	mitochondrion	52.61	23.19
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	54.62	23.05
OQU86111	Sorghum	plastid	52.61	20.89
GSMUA_Achr2P12990_001	Banana	nucleus	30.12	19.84
GSMUA_Achr7P01160_001	Banana	nucleus	30.12	19.63
GSMUA_Achr4P31520_001	Banana	nucleus	29.72	19.47
GSMUA_Achr4P22960_001	Banana	nucleus	29.72	19.37
GSMUA_Achr5P02530_001	Banana	nucleus	28.51	18.59
GSMUA_Achr6P27420_001	Banana	nucleus	21.29	17.73
GSMUA_Achr4P32850_001	Banana	nucleus	23.29	16.91
GSMUA_Achr2P21050_001	Banana	mitochondrion	14.46	13.79
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	17.67	13.33
GSMUA_Achr2P22480_001	Banana	cytosol	15.66	12.04

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G01020_001	EnsemblPlants:GSMUA_Achr10P01020_001
EnsemblPlants:GSMUA_Achr10T01020_001	InterPro:IPR017887	UniProt:M0REC9	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029565D5	SEG:seg	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G01020_001]

Coordinates

chr10:-:1711766..1712995

Molecular Weight (calculated)

26184.7 Da

IEP (calculated)

10.178

GRAVY (calculated)

-0.439

Length

249 amino acids

Sequence
(BLAST)

001: MGESYSHQSL FLQQQLQRPV ARSRLGGGGV RGGAVGEIVE VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI
101: KNAKTAIDEL AELPPWTPSA TSSAPPTHDA HFPGSVHGGG CGGGHAFSFP PPQAVPLHSV LGHSQLFSQR GPLQSSNPPA IRAWADPAAA AAAADHRMQP
201: ALHPSISSIG LASGTGFSGF QVPARIQGEE EHDGIITGKP PSASSASRS

Best Arabidopsis Sequence Match ( AT1G53230.2 )
(BLAST)

001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H

Arabidopsis Description

TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.