Factsheet for GSMUA_Achr5P06660_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	41.61	81.33
GSMUA_Achr10P...	Banana	nucleus	40.55	76.71
GSMUA_Achr7P13980_001	Banana	nucleus	46.71	59.78
GSMUA_Achr10P...	Banana	nucleus	32.91	58.49
GSMUA_Achr3P03540_001	Banana	nucleus	49.89	58.46
GSMUA_Achr6P14430_001	Banana	nucleus	29.72	58.33
GSMUA_Achr3P31370_001	Banana	nucleus	25.48	45.98
TraesCS3B01G164500.1	Wheat	nucleus	41.4	43.33
TraesCS3D01G146900.1	Wheat	nucleus	41.4	42.95
TraesCS3A01G140100.1	Wheat	nucleus	41.4	42.67
Zm00001d008919_P001	Maize	nucleus, plastid	37.58	41.65
Os01t0213800-01	Rice	mitochondrion	46.07	37.48
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	46.07	36.78
Zm00001d039371_P001	Maize	mitochondrion	43.1	35.93
OQU86111	Sorghum	plastid	44.16	33.17
GSMUA_Achr2P12990_001	Banana	nucleus	18.47	23.02
GSMUA_Achr4P31520_001	Banana	nucleus	18.26	22.63
GSMUA_Achr5P02530_001	Banana	nucleus	17.83	21.99
GSMUA_Achr7P01160_001	Banana	nucleus	17.62	21.73
GSMUA_Achr4P22960_001	Banana	nucleus	17.41	21.47
GSMUA_Achr6P27420_001	Banana	nucleus	12.53	19.73
GSMUA_Achr4P32850_001	Banana	nucleus	13.8	18.95
GSMUA_Achr2P21050_001	Banana	mitochondrion	8.92	16.09
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	10.19	14.55
GSMUA_Achr2P22480_001	Banana	cytosol	9.13	13.27

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G06660_001	EnsemblPlants:GSMUA_Achr5P06660_001
EnsemblPlants:GSMUA_Achr5T06660_001	InterPro:IPR017887	UniProt:M0SW95	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002959A79	SEG:seg	:

Description

Putative Transcription factor TCP4 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06660_001]

Coordinates

chr5:-:4899916..4901575

Molecular Weight (calculated)

50712.5 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.698

Length

471 amino acids

Sequence
(BLAST)

001: MAKASSRRPN ISSATRKCYQ FSSRRGRRKL RETRSSSRRQ LVRSKAGTGA QEEGAGSGSA EESREEQSLR GFQLHQIHHN RSSYFSSSSS SAATASSSEY
101: ACLPERIGEG HSHNSAGYDQ LALLHHHHQQ QLQRPQPRSR HGGARGGAVG EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR
201: LGYDRPSKAV DWLMKNAKAA IDELAELPPW SPSATTIGES SSKPVAVADP ALSTAFSFGV GGGDGGNEGN TFLPPSLDTD SIADTIKSFF PMAAAATPPS
301: SSPSIGFLSY SPELPSRTSG QAQDLRLSLQ SFQDPIFHDP ESGHHHHHHH SHHRIAPWNM VDSSGGGGGY VFSFPPPQAA PLHSLLGQSL FFSQRGPLQS
401: SNSPAVRAWA DPVDAAADHR MQPALYSSMP SIGFASGASF PGFRIPARIQ GEEEHDGHND KPPSAASASR H

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.