Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P01160_001 | Banana | nucleus | 83.25 | 83.25 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 73.3 | 74.07 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 73.04 | 73.04 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 69.9 | 70.26 |
| OQU89064 | Sorghum | cytosol | 12.04 | 57.5 |
| Os03t0785800-01 | Rice | nucleus | 43.46 | 46.5 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 51.31 | 44.14 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 47.12 | 43.69 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 47.38 | 43.51 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 47.64 | 42.92 |
| Os07t0152000-01 | Rice | nucleus | 49.21 | 42.25 |
| KXG37409 | Sorghum | cytosol | 42.67 | 41.9 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 41.62 | 41.73 |
| Zm00001d018806_P001 | Maize | nucleus | 47.12 | 41.19 |
| Zm00001d034353_P001 | Maize | cytosol | 41.36 | 40.93 |
| Zm00001d007868_P001 | Maize | nucleus | 46.86 | 40.68 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 41.36 | 39.5 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 47.64 | 39.48 |
| AT4G18390.1 | Thale cress | nucleus | 37.43 | 39.18 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 40.31 | 38.4 |
| PGSC0003DMT400051253 | Potato | nucleus | 34.29 | 38.3 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 39.79 | 37.62 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 39.79 | 37.53 |
| Solyc08g048390.1.1 | Tomato | nucleus | 37.7 | 37.21 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 29.06 | 37.0 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 28.53 | 36.95 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 28.53 | 36.95 |
| AT1G30210.1 | Thale cress | nucleus | 31.15 | 36.73 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 28.53 | 36.7 |
| KRH11155 | Soybean | nucleus | 48.43 | 36.2 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 28.53 | 36.09 |
| KRH42567 | Soybean | nucleus | 43.98 | 35.9 |
| KRH58674 | Soybean | nucleus | 43.72 | 34.94 |
| KRH21093 | Soybean | nucleus | 48.17 | 34.59 |
| Zm00001d022256_P001 | Maize | nucleus | 28.8 | 34.06 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 46.6 | 32.48 |
| Solyc08g048370.2.1 | Tomato | cytosol | 26.7 | 31.29 |
| GSMUA_Achr10P... | Banana | nucleus | 19.37 | 29.72 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 18.59 | 29.46 |
| CDX78849 | Canola | nucleus, plastid | 18.06 | 28.87 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 18.06 | 28.87 |
| GSMUA_Achr6P14430_001 | Banana | nucleus | 17.28 | 27.5 |
| GSMUA_Achr3P31370_001 | Banana | nucleus | 18.59 | 27.2 |
| GSMUA_Achr10P... | Banana | nucleus | 16.75 | 24.15 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 12.3 | 22.6 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 17.54 | 22.41 |
| GSMUA_Achr7P13980_001 | Banana | nucleus | 20.94 | 21.74 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 19.11 | 21.28 |
| GSMUA_Achr3P03540_001 | Banana | nucleus | 20.94 | 19.9 |
| GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 21.47 | 17.41 |
| GSMUA_Achr2P21050_001 | Banana | mitochondrion | 10.47 | 15.33 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 12.83 | 14.85 |
| GSMUA_Achr2P22480_001 | Banana | cytosol | 10.99 | 12.96 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G22960_001 | EnsemblPlants:GSMUA_Achr4P22960_001 |
| EnsemblPlants:GSMUA_Achr4T22960_001 | InterPro:IPR017887 | UniProt:M0SRA7 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295E63E | SEG:seg | : |
Description
Putative Transcription factor PCF6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22960_001]
Coordinates
chr4:-:23197774..23199081
Molecular Weight (calculated)
41164.5 Da
IEP (calculated)
7.758
GRAVY (calculated)
-0.729
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLENTHASK RSRTVGNGGQ ASKIGRKEHQ DEDEEDRERK GGGADAGRVA PWLHHPSSRI FRVSRASGGK DRHSKVYTAK GLRDRRVRLS VSTAIQFYDL
101: QDRLGYDQPS KAIEWLIKAA AAAINELPPL DGFPKLPQPS GDEVMKADPD VERSYSQQQQ QQQHPSTKSG CSSTSDTSKG SGLSLSNGAN NVAAVAEGEE
201: NSGHNCIQKQ IPTAIYFGQA GLFAQSQKSQ QLPSGFSSQS HFGNSCPMGM LPFNVAATGD HQEMQQFSLL QDNFFPVSAV AAMANYNLNF SISSGLAGFN
301: RGTLQSNSPA QMPQEHHHSH NHLQRLSSTV DGSNLQFFGA AAGSAAAATN AENQFPAGFG DHLQLCYGDG YRQSDLKGKG KN
101: QDRLGYDQPS KAIEWLIKAA AAAINELPPL DGFPKLPQPS GDEVMKADPD VERSYSQQQQ QQQHPSTKSG CSSTSDTSKG SGLSLSNGAN NVAAVAEGEE
201: NSGHNCIQKQ IPTAIYFGQA GLFAQSQKSQ QLPSGFSSQS HFGNSCPMGM LPFNVAATGD HQEMQQFSLL QDNFFPVSAV AAMANYNLNF SISSGLAGFN
301: RGTLQSNSPA QMPQEHHHSH NHLQRLSSTV DGSNLQFFGA AAGSAAAATN AENQFPAGFG DHLQLCYGDG YRQSDLKGKG KN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.