Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G423900.1 | Wheat | cytosol | 95.05 | 94.81 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 93.32 | 94.02 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 85.64 | 86.5 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 47.77 | 45.52 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 38.37 | 41.01 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 37.62 | 39.79 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 37.38 | 39.74 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 37.38 | 39.53 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 36.63 | 38.74 |
| AT1G30210.1 | Thale cress | nucleus | 28.96 | 36.11 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 26.49 | 35.67 |
| AT4G18390.1 | Thale cress | nucleus | 31.68 | 35.07 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 38.37 | 34.91 |
| PGSC0003DMT400051253 | Potato | nucleus | 29.46 | 34.8 |
| KRH58674 | Soybean | nucleus | 37.13 | 31.38 |
| Solyc08g048390.1.1 | Tomato | nucleus | 29.7 | 31.01 |
| KRH42567 | Soybean | nucleus | 35.64 | 30.77 |
| Solyc08g048370.2.1 | Tomato | cytosol | 24.5 | 30.37 |
| KRH11155 | Soybean | nucleus | 36.63 | 28.96 |
| KRH21093 | Soybean | nucleus | 36.39 | 27.63 |
| CDX78849 | Canola | nucleus, plastid | 15.1 | 25.52 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 15.1 | 25.52 |
| TraesCS3B01G333400.1 | Wheat | nucleus | 17.57 | 25.36 |
| TraesCS1B01G346300.1 | Wheat | nucleus | 18.81 | 24.68 |
| TraesCS2B01G025700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 11.88 | 23.53 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 25.25 | 22.67 |
| TraesCS5B01G205600.1 | Wheat | cytosol | 11.14 | 16.42 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 11.88 | 16.27 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 14.11 | 16.1 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G426200.1 | EnsemblPlantsGene:TraesCS5B01G426200 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF63 | PFAM:PF03634 | PFscan:PS51369 | SEG:seg | MapMan:15.5.19 | : |
Description
No Description!
Coordinates
chr5B:+:601864542..601865756
Molecular Weight (calculated)
41951.8 Da
IEP (calculated)
9.804
GRAVY (calculated)
-0.561
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MESADAAGGA PGGGAPPGRG SSAKRMRGVI GSGGGDGMEL VPWGSPPQPG QQPPQLQGSA SRICRVRASG GKDRHSKVYT SKGIRDRRVR LSVPTAIQFY
101: DLQDRLGFDQ PSKAVEWLIN AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQPQGSR SLCSSTSETS KGSELSLSRS DGRVGGGSSL DKEVTVASNP
201: SAQAGSFTEL LTGAGAASAI ATAAPRRQSW QQQQQQPVSA VTADRVGIAH PGKGSGAQVV PTYPGFRFGN APPFGMQPAQ PFNFGPSAQN QMTQFSLVQG
301: GLAAAPAPAQ AGDYSLDFSM NSGYMGATRG ALQSNSPHFS SHQQQQQQQR QLQDLDDGPS PPFLYANAAA TAPHLASENH LTATAAMQLW NGLQHAGMKE
401: KSKN
101: DLQDRLGFDQ PSKAVEWLIN AASAAIDELP SLDPAAFANM PADHQAAPRA GKQQQPQGSR SLCSSTSETS KGSELSLSRS DGRVGGGSSL DKEVTVASNP
201: SAQAGSFTEL LTGAGAASAI ATAAPRRQSW QQQQQQPVSA VTADRVGIAH PGKGSGAQVV PTYPGFRFGN APPFGMQPAQ PFNFGPSAQN QMTQFSLVQG
301: GLAAAPAPAQ AGDYSLDFSM NSGYMGATRG ALQSNSPHFS SHQQQQQQQR QLQDLDDGPS PPFLYANAAA TAPHLASENH LTATAAMQLW NGLQHAGMKE
401: KSKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.