Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G062160.1 | |
| HORVU3Hr1G033880.2 | |
| HORVU7Hr1G031190.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | HORVU3Hr1G033880.2 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | HORVU7Hr1G031190.2 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | HORVU1Hr1G062160.1 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G423900.1 | Wheat | cytosol | 86.75 | 85.68 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 86.5 | 85.64 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 85.75 | 85.54 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 46.5 | 45.15 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 39.5 | 41.8 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 39.5 | 41.36 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 39.25 | 41.32 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 39.0 | 40.84 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 38.5 | 40.31 |
| AT1G30210.1 | Thale cress | nucleus | 29.5 | 36.42 |
| PGSC0003DMT400051253 | Potato | nucleus | 30.75 | 35.96 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 39.75 | 35.81 |
| AT4G18390.1 | Thale cress | nucleus | 32.5 | 35.62 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 26.0 | 35.25 |
| KRH58674 | Soybean | nucleus | 38.0 | 31.8 |
| Solyc08g048390.1.1 | Tomato | nucleus | 30.5 | 31.52 |
| KRH42567 | Soybean | nucleus | 36.25 | 30.98 |
| Solyc08g048370.2.1 | Tomato | cytosol | 25.25 | 30.98 |
| KRH11155 | Soybean | nucleus | 38.0 | 29.75 |
| KRH21093 | Soybean | nucleus | 38.0 | 28.57 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 15.75 | 26.36 |
| CDX78849 | Canola | nucleus, plastid | 15.75 | 26.36 |
| HORVU1Hr1G077080.1 | Barley | nucleus | 18.5 | 25.34 |
| HORVU3Hr1G073830.1 | Barley | nucleus | 17.25 | 24.82 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 24.5 | 16.61 |
| HORVU5Hr1G061270.1 | Barley | nucleus | 11.0 | 16.12 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 14.25 | 15.97 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 10.75 | 14.48 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 7.75 | 14.42 |
| HORVU3Hr1G072670.2 | Barley | nucleus | 8.25 | 14.1 |
Protein Annotations
| MapMan:15.5.19 | EMBL:AK358289 | UniProt:F2D332 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU5Hr1G103400 | EnsemblPlants:HORVU5Hr1G103400.1 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF63 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002005389 | SEG:seg | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D332]
Coordinates
chrchr5H:+:615593077..615596370
Molecular Weight (calculated)
41749.6 Da
IEP (calculated)
8.633
GRAVY (calculated)
-0.535
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MESADAAGGA AGPGRGPSAK RMRGLMGSGG DGGGDGMELV PWGSPPPAGQ QQQQPHLLHG SASRICRVKA SGGKDRHSKV YTSKGIRDRR VRLSVPTAIQ
101: FYDLQDRLGF DQPSKAIEWL INAASPAIDE LPSLDPAAFA AMPADHQAAP RAGKQQQGSR SLCSSTSETS KGSELSLSRS DCRVGGGSSR DKEVTVASNP
201: STQAGSFTEL LTGAGSAGAA QHRQSWQQQR QLAVSAVAVT ADCIGIAHPG KGGGAQVVPT YPGFRFGNAP PLGMVPAQPF NFGTSAQMTH FSSLVQDGLS
301: AAPAPAQAGD YSLDFSINSG YMGANRGPLQ SNSPHFSSHH HHQQQQQLQD LDDGPSPPFL YEQAAATAPH LASENHLGGT AAMQLWNGFR HATMKEKSKN
101: FYDLQDRLGF DQPSKAIEWL INAASPAIDE LPSLDPAAFA AMPADHQAAP RAGKQQQGSR SLCSSTSETS KGSELSLSRS DCRVGGGSSR DKEVTVASNP
201: STQAGSFTEL LTGAGSAGAA QHRQSWQQQR QLAVSAVAVT ADCIGIAHPG KGGGAQVVPT YPGFRFGNAP PLGMVPAQPF NFGTSAQMTH FSSLVQDGLS
301: AAPAPAQAGD YSLDFSINSG YMGANRGPLQ SNSPHFSSHH HHQQQQQLQD LDDGPSPPFL YEQAAATAPH LASENHLGGT AAMQLWNGFR HATMKEKSKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.