Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | KRH10202 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | KRH23133 | AT4G14700.1 | 18818695 |
| AT1G30210.1 | KRG95533 | AT5G13060.1 | 18818695 |
| AT1G30210.1 | KRH67208 | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11155 | Soybean | nucleus | 87.78 | 91.39 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 55.83 | 66.89 |
| KRH58674 | Soybean | nucleus | 53.95 | 60.04 |
| KRH42567 | Soybean | nucleus | 52.07 | 59.19 |
| CDX99891 | Canola | nucleus | 32.14 | 53.94 |
| Bra032365.1-P | Field mustard | nucleus | 31.95 | 53.46 |
| CDY26285 | Canola | nucleus | 31.95 | 53.46 |
| Solyc08g048390.1.1 | Tomato | nucleus | 38.35 | 52.71 |
| PGSC0003DMT400051253 | Potato | nucleus | 33.65 | 52.34 |
| AT1G30210.1 | Thale cress | nucleus | 31.58 | 51.85 |
| Bra010789.1-P | Field mustard | nucleus | 29.51 | 50.97 |
| CDX90234 | Canola | nucleus | 29.51 | 50.97 |
| CDY59229 | Canola | nucleus | 29.89 | 50.8 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 35.9 | 50.53 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 36.09 | 50.53 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 36.28 | 50.52 |
| OQU89064 | Sorghum | cytosol | 7.52 | 50.0 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 34.59 | 48.17 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 34.59 | 48.17 |
| Solyc08g048370.2.1 | Tomato | cytosol | 27.82 | 45.4 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 35.15 | 45.39 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 35.15 | 44.95 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 34.96 | 43.87 |
| Os07t0152000-01 | Rice | nucleus | 36.28 | 43.37 |
| Os03t0785800-01 | Rice | nucleus | 28.38 | 42.3 |
| Zm00001d007868_P001 | Maize | nucleus | 34.59 | 41.82 |
| Zm00001d018806_P001 | Maize | nucleus | 34.21 | 41.65 |
| KXG37409 | Sorghum | cytosol | 29.89 | 40.87 |
| EER95875 | Sorghum | cytosol, nucleus, peroxisome | 35.15 | 40.56 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 28.76 | 40.16 |
| Zm00001d034353_P001 | Maize | cytosol | 28.76 | 39.64 |
| TraesCS5B01G032000.1 | Wheat | nucleus | 22.18 | 39.33 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 21.8 | 39.32 |
| EES16387 | Sorghum | cytosol, nucleus, plastid | 22.18 | 39.07 |
| HORVU5Hr1G008340.2 | Barley | nucleus | 21.62 | 38.98 |
| TraesCS5A01G031900.1 | Wheat | nucleus | 21.62 | 38.72 |
| HORVU5Hr1G103400.1 | Barley | nucleus | 28.57 | 38.0 |
| Zm00001d022256_P001 | Maize | nucleus | 22.74 | 37.46 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 27.82 | 36.91 |
| TraesCS5B01G426200.1 | Wheat | nucleus | 27.63 | 36.39 |
| TraesCS5A01G423900.1 | Wheat | cytosol | 27.63 | 36.3 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 35.15 | 34.12 |
| Os12t0616400-01 | Rice | cytosol, nucleus, peroxisome | 10.9 | 27.88 |
| KRH22307 | Soybean | nucleus | 17.48 | 27.03 |
| KRH27017 | Soybean | nucleus | 17.29 | 26.82 |
| KRH55125 | Soybean | nucleus | 18.61 | 25.32 |
| KRH26201 | Soybean | nucleus | 18.61 | 24.94 |
| KRH25697 | Soybean | nucleus | 13.16 | 24.05 |
| KRH27317 | Soybean | nucleus | 16.73 | 23.61 |
| KRG93654 | Soybean | nucleus | 16.35 | 23.26 |
| KRH45058 | Soybean | nucleus | 15.23 | 22.82 |
| KRH21998 | Soybean | nucleus | 16.73 | 22.65 |
| KRH55819 | Soybean | nucleus | 13.91 | 22.22 |
| KRH01308 | Soybean | cytosol | 15.98 | 22.14 |
| KRH54711 | Soybean | plastid | 15.23 | 20.77 |
| KRH63215 | Soybean | nucleus, plastid | 15.04 | 20.67 |
| KRH03150 | Soybean | nucleus, plastid | 13.91 | 19.02 |
| KRH56798 | Soybean | nucleus | 13.91 | 18.93 |
| KRH63057 | Soybean | nucleus | 12.41 | 17.14 |
| KRG93829 | Soybean | nucleus, plastid | 13.35 | 17.07 |
| KRH01497 | Soybean | plastid | 11.84 | 17.03 |
| KRH45185 | Soybean | plastid | 11.65 | 16.76 |
| KRH18263 | Soybean | plastid | 13.16 | 16.71 |
| KRH54810 | Soybean | nucleus | 12.41 | 16.67 |
| KRH03810 | Soybean | nucleus | 11.84 | 16.58 |
| KRH56692 | Soybean | nucleus | 11.65 | 16.49 |
| KRH35497 | Soybean | nucleus | 10.9 | 15.26 |
| KRG91334 | Soybean | nucleus | 10.53 | 14.93 |
Protein Annotations
| EntrezGene:100787772 | MapMan:15.5.19 | EMBL:ACUP02008338 | InterPro:CYC/TB1_R_domain | ncoils:Coil | EnsemblPlantsGene:GLYMA_13G219900 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | UniProt:I1M1H9 | InterPro:IPR017887 | InterPro:IPR017888 |
| EnsemblPlants:KRH21093 | ProteinID:KRH21093 | ProteinID:KRH21093.1 | ProteinID:KRH21094.1 | ProteinID:KRH21095.1 | PFAM:PF03634 |
| PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI000233B076 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:33290348..33300721
Molecular Weight (calculated)
58370.4 Da
IEP (calculated)
7.831
GRAVY (calculated)
-1.040
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDEIQACK FPRVGNGRSS DQYQEEEEEG GDLRLRKGVG VGGGGGGGGS DASTNHFHQS SWHHSSRIIR VSRASGGKDR HSKVMTSKGL RDRRVRLSVT
101: TAIQFYDLQD RLGYDQPSKA VEWLIKAASE AISELPSLNN PFPDTPKQLS DKKRPTSGGG QQQQQIQQGH FDDADGDTSY PQNQSQNLSL SKSACSSTSE
201: TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE KEKEKESESS IAHHHHHHHV NNNNHMSHTA SFTELLTGGI GSTVTVNPNT TTTTTTTTTS
301: PNGSSVHQIH DGHDHETNLF NKGRQQQQQH HWSQTVTPMD YFSTGLLVGP SSSSARTQQH QHQSSSAHFQ LGHAHALPIS PFSGENHSEQ LQHFSFMPDH
401: LNNIPAHHVV TSSSASHQPN GGDNNYNLNF SISTSTGLAG YNNRGTLQSN SPSSSFLPHH LQRFQPLDGS SNLPFFIGAA APSSAPPTMD NNNNNNSNNH
501: HHLQFSPVFD GRLQLCYGDG TRHSDHKGKG KN
101: TAIQFYDLQD RLGYDQPSKA VEWLIKAASE AISELPSLNN PFPDTPKQLS DKKRPTSGGG QQQQQIQQGH FDDADGDTSY PQNQSQNLSL SKSACSSTSE
201: TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE KEKEKESESS IAHHHHHHHV NNNNHMSHTA SFTELLTGGI GSTVTVNPNT TTTTTTTTTS
301: PNGSSVHQIH DGHDHETNLF NKGRQQQQQH HWSQTVTPMD YFSTGLLVGP SSSSARTQQH QHQSSSAHFQ LGHAHALPIS PFSGENHSEQ LQHFSFMPDH
401: LNNIPAHHVV TSSSASHQPN GGDNNYNLNF SISTSTGLAG YNNRGTLQSN SPSSSFLPHH LQRFQPLDGS SNLPFFIGAA APSSAPPTMD NNNNNNSNNH
501: HHLQFSPVFD GRLQLCYGDG TRHSDHKGKG KN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.