Factsheet for Bra010789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008860.1-P
Bra023389.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	Bra029471.1-P	AT4G14700.1	18818695
AT1G30210.1	Bra008860.1-P	AT5G13060.1	18818695
AT1G30210.1	Bra023389.1-P	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90234	Canola	nucleus	100.0	100.0
CDY59229	Canola	nucleus	94.81	93.29
Bra032365.1-P	Field mustard	nucleus	77.6	75.16
AT1G30210.1	Thale cress	nucleus	78.25	74.38
VIT_10s0003g03910.t01	Wine grape	nucleus	50.65	35.14
Bra012600.1-P	Field mustard	nucleus	42.21	34.03
KRH42567	Soybean	nucleus	49.35	32.48
KRH58674	Soybean	nucleus	50.0	32.22
KRH11155	Soybean	nucleus	50.97	30.72
KRH21093	Soybean	nucleus	50.97	29.51
Bra013304.1-P	Field mustard	nucleus, plastid	20.45	26.36
Bra005967.1-P	Field mustard	nucleus, plastid	16.56	20.73
Bra039158.1-P	Field mustard	nucleus	20.78	20.71
Bra021586.1-P	Field mustard	nucleus	23.38	20.57
Bra030952.1-P	Field mustard	nucleus	22.4	20.0
Bra029344.1-P	Field mustard	nucleus, plastid	18.83	19.27
Bra018280.1-P	Field mustard	nucleus	21.43	18.91
Bra001579.1-P	Field mustard	nucleus	23.7	17.94
Bra027284.1-P	Field mustard	nucleus	23.38	17.73
Bra012990.1-P	Field mustard	nucleus	20.45	17.21
Bra004212.1-P	Field mustard	nucleus	18.18	16.42
Bra034010.1-P	Field mustard	nucleus	17.53	15.61
Bra004097.1-P	Field mustard	nucleus	16.23	14.41
Bra037579.1-P	Field mustard	nucleus	13.31	14.39
Bra038350.1-P	Field mustard	nucleus	15.58	14.33
Bra001032.1-P	Field mustard	nucleus	21.75	12.45
Bra001710.1-P	Field mustard	nucleus	14.61	10.59

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra010789	EnsemblPlants:Bra010789.1	EnsemblPlants:Bra010789.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4D2T6	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF2	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002546F1D	SEG:seg	:

Description

AT1G30210 (E=7e-091) TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor

Coordinates

chrA08:+:16459831..16460757

Molecular Weight (calculated)

34412.3 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.921

Length

308 amino acids

Sequence
(BLAST)

001: MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SNPSSRIIRV SRATGGKDRH SKVLTSKGLR DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS
101: ISDLNPIDTN FEQTLSLSKS STSESSLLSL SRTESRGKAR ERTAKDKDLQ SSFTQLLTRG FDESNRSWTG GGSSDCFNPV QLIPSSLNHR QEPSLNHSNS
201: QNQYSFLPNY NVGISSSDSP GEAGCYSSRG TLQSNSLPLF LNNNINQRSI SSSSSSSSPM DSQSISFFMS PPLHNHSHDQ LPEAFDGRLY LYYGEGNRSS
301: DDKGKERR

Best Arabidopsis Sequence Match ( AT1G30210.1 )
(BLAST)

001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR

Arabidopsis Description

TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.