Factsheet for Bra030952.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02519	Canola	nucleus	98.26	98.55
AT1G53230.1	Thale cress	nucleus	71.3	62.92
Bra021586.1-P	Field mustard	nucleus	53.04	52.29
Bra027284.1-P	Field mustard	nucleus	59.71	50.74
Bra001579.1-P	Field mustard	nucleus	57.97	49.14
Bra018280.1-P	Field mustard	nucleus	35.65	35.24
Zm00001d008919_P001	Maize	nucleus, plastid	38.84	31.53
TraesCS3B01G164500.1	Wheat	nucleus	40.58	31.11
TraesCS3D01G146900.1	Wheat	nucleus	40.58	30.84
TraesCS3A01G140100.1	Wheat	nucleus	40.58	30.63
VIT_10s0003g00870.t01	Wine grape	nucleus	32.17	29.06
Zm00001d039371_P001	Maize	mitochondrion	42.03	25.66
KXG33398	Sorghum	nucleus	33.04	25.28
Zm00001d043423_P001	Maize	nucleus	31.59	25.12
Os01t0755500-01	Rice	cytosol, mitochondrion	31.88	24.66
Os01t0213800-01	Rice	mitochondrion	40.87	24.35
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	41.16	24.07
Bra010789.1-P	Field mustard	nucleus	20.0	22.4
OQU86111	Sorghum	plastid	40.0	22.01
Bra005967.1-P	Field mustard	nucleus, plastid	15.36	21.54
Bra032365.1-P	Field mustard	nucleus	18.55	20.13
Bra039158.1-P	Field mustard	nucleus	17.97	20.06
Bra012600.1-P	Field mustard	nucleus	21.74	19.63
Bra029344.1-P	Field mustard	nucleus, plastid	15.36	17.61
Bra012990.1-P	Field mustard	nucleus	17.97	16.94
HORVU0Hr1G006890.2	Barley	cytosol	10.43	16.74
Zm00001d012725_P002	Maize	plastid	31.88	15.76
Bra034010.1-P	Field mustard	nucleus	15.65	15.61
Bra004212.1-P	Field mustard	nucleus	15.07	15.25
Bra004097.1-P	Field mustard	nucleus	14.78	14.7
Bra038350.1-P	Field mustard	nucleus	13.62	14.03
Bra037579.1-P	Field mustard	nucleus	9.86	11.93
Bra001032.1-P	Field mustard	nucleus	18.26	11.71
Bra013304.1-P	Field mustard	nucleus, plastid	7.25	10.46
Bra001710.1-P	Field mustard	nucleus	11.3	9.18

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra030952	EnsemblPlants:Bra030952.1	EnsemblPlants:Bra030952.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009965	GO:GO:0009987
GO:GO:0030154	GO:GO:0045962	GO:GO:0048366	InterPro:IPR017887	UniProt:M4EQ81	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002545808
SEG:seg	:	:	:	:	:

Description

AT1G53230 (E=5e-045) TCP3 | TCP3; transcription factor

Coordinates

chrA08:+:1031146..1032183

Molecular Weight (calculated)

37597.3 Da

IEP (calculated)

7.271

GRAVY (calculated)

-0.786

Length

345 amino acids

Sequence
(BLAST)

001: MADEESNHHH SIHSPSSPHP LGMRHQSVFS TAAEHGGCGE IVEVEGGHIV RSTGKKDRHS KVCTAKGPRD RRVRLSAPTA IQFYDVQDRL GLDRPSKAVD
101: WLIMKAKSAI DNLAELPPWN PADTIRQAAA NKPKRPKTVI PPPETGIHGG SGKETEHHHH QSSFLPASLS TPDYHPPPSS RANAQSQDLR LSLHSFQNGP
201: AFADETEHAL FSGQSNPLVF DSSTASCDQS PEFGKMQRLV TWNNGGAADS AAFGGGGFVF ASPATTTSFQ PQSQVFSQRG PLQSINTPMP PRAWFDPYHD
301: HHHNHHHHPY HISPAIHQSA IPARYLSEED GHGDKPSSAS SDSRH

Best Arabidopsis Sequence Match ( AT1G53230.2 )
(BLAST)

001: MAPDNDHFLD SPSPPLLEMR HHQSATENGG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS APTAIQFYDV QDRLGFDRPS KAVDWLITKA
101: KSAIDDLAQL PPWNPADTLR QHAAAAANAK PRKTKTLISP PPPQPEETEH HRIGEEEDNE SSFLPASMDS DSIADTIKSF FPVASTQQSY HHQPPSRGNT
201: QNQDLLRLSL QSFQNGPPFP NQTEPALFSG QSNNQLAFDS STASWEQSHQ SPEFGKIQRL VSWNNVGAAE SAGSTGGFVF ASPSSLHPVY SQSQLLSQRG
301: PLQSINTPMI RAWFDPHHHH HHHQQSMTTD DLHHHHPYHI PPGIHQSAIP GIAFASSGEF SGFRIPARFQ GEQEEHGGDN KPSSASSDSR H

Arabidopsis Description

TCP3TCP3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.