Factsheet for Bra001579.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82453	Canola	nucleus	99.02	99.51
CDX75802	Canola	nucleus	97.3	98.02
Bra027284.1-P	Field mustard	nucleus	84.52	84.73
Bra021586.1-P	Field mustard	nucleus	70.76	82.29
AT3G15030.1	Thale cress	nucleus	82.56	80.0
Bra030952.1-P	Field mustard	nucleus	49.14	57.97
Solyc12g014140.1.1	Tomato	nucleus	42.75	44.16
PGSC0003DMT400039786	Potato	nucleus	43.98	42.52
VIT_12s0028g02520.t01	Wine grape	nucleus	30.71	40.72
TraesCS3B01G164500.1	Wheat	nucleus	43.98	39.78
TraesCS3D01G146900.1	Wheat	nucleus	43.98	39.43
TraesCS3A01G140100.1	Wheat	nucleus	43.73	38.95
Bra018280.1-P	Field mustard	nucleus	32.43	37.82
Zm00001d008919_P001	Maize	nucleus, plastid	38.57	36.94
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	44.47	30.68
KXG33398	Sorghum	nucleus	32.92	29.71
Os01t0213800-01	Rice	mitochondrion	42.26	29.71
Zm00001d039371_P001	Maize	mitochondrion	40.54	29.2
Os01t0755500-01	Rice	cytosol, mitochondrion	31.94	29.15
Zm00001d043423_P001	Maize	nucleus	30.71	28.8
OQU86111	Sorghum	plastid	40.29	26.16
Bra005967.1-P	Field mustard	nucleus, plastid	14.74	24.39
Bra010789.1-P	Field mustard	nucleus	17.94	23.7
HORVU0Hr1G006890.2	Barley	cytosol	12.04	22.79
Bra012600.1-P	Field mustard	nucleus	21.13	22.51
Bra032365.1-P	Field mustard	nucleus	16.95	21.7
Bra039158.1-P	Field mustard	nucleus	15.48	20.39
Bra029344.1-P	Field mustard	nucleus, plastid	14.5	19.6
Zm00001d012725_P002	Maize	plastid	30.71	17.91
Bra034010.1-P	Field mustard	nucleus	14.99	17.63
Bra012990.1-P	Field mustard	nucleus	15.48	17.21
Bra004212.1-P	Field mustard	nucleus	14.25	17.01
Bra004097.1-P	Field mustard	nucleus	13.51	15.85
Bra037579.1-P	Field mustard	nucleus	10.07	14.39
Bra038350.1-P	Field mustard	nucleus	11.79	14.33
Bra013304.1-P	Field mustard	nucleus, plastid	8.11	13.81
Bra001032.1-P	Field mustard	nucleus	16.22	12.27
Bra001710.1-P	Field mustard	nucleus	10.81	10.35

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra001579	EnsemblPlants:Bra001579.1	EnsemblPlants:Bra001579.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:M4CBJ9	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00025409E7	SEG:seg

Description

AT3G15030 (E=2e-141) TCP4, MEE35 | TCP4 (TCP family transcription factor 4); transcription factor

Coordinates

chrA03:+:17171721..17172944

Molecular Weight (calculated)

44475.3 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.817

Length

407 amino acids

Sequence
(BLAST)

001: MAEDDEAHRF LHPPAPPSSS SMRRRATSEV ANGGCGEIVE VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTASQF YDVQDRLGFD RPSKAVDWLI
101: KKAKTSIDEL AQLPPWDPAD AIRNAAANAK PRRTAAKARV SPSPPPQQLQ FSGGTAVGFA GATERRSNDN NQSSFLPPSM DSDSIADTIK SFFPVVGSTA
201: EAPPHQLMHN YHHHHPPDLL SRTNSQNQDL RLSLQPFPDG PPSLLHHHHH SVAEPVLFYG QSNPLGYDTS TGGWEQQSIQ RLVAWNSGGA NDTGNGGGGG
301: GFLFAPPPNH PTSTTSFQPV LGQSQLYSQR GPLQSSYSPM IRAWFDPTHH HHQSISTDDL NHHHHHMPPP IASGEFSSGF RVPARFQGQE EEQHDGLNNK
401: PSSASRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.