Factsheet for PGSC0003DMT400039786

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014140.1.1	Tomato	nucleus	79.1	84.52
PGSC0003DMT400032269	Potato	nucleus	55.58	58.5
CDY68596	Canola	cytosol, nucleus	43.23	47.15
AT3G15030.1	Thale cress	nucleus	46.32	46.43
Bra021586.1-P	Field mustard	nucleus	38.0	45.71
CDY20097	Canola	nucleus	38.24	45.1
CDX82453	Canola	nucleus	42.76	44.44
CDX75802	Canola	nucleus	42.52	44.31
Bra001579.1-P	Field mustard	nucleus	42.52	43.98
Bra027284.1-P	Field mustard	nucleus	42.28	43.84
TraesCS3B01G164500.1	Wheat	nucleus	42.04	39.33
VIT_12s0028g02520.t01	Wine grape	nucleus	28.5	39.09
TraesCS3A01G140100.1	Wheat	nucleus	42.28	38.95
TraesCS3D01G146900.1	Wheat	nucleus	41.81	38.77
PGSC0003DMT400024329	Potato	nucleus	28.5	38.59
Zm00001d008919_P001	Maize	nucleus, plastid	38.48	38.12
Os01t0213800-01	Rice	mitochondrion	43.47	31.61
Zm00001d039371_P001	Maize	mitochondrion	42.28	31.5
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	42.76	30.51
PGSC0003DMT400059117	Potato	nucleus	23.99	30.24
Os01t0755500-01	Rice	cytosol, mitochondrion	31.35	29.6
KXG33398	Sorghum	nucleus	31.59	29.49
Zm00001d043423_P001	Maize	nucleus	30.17	29.26
OQU86111	Sorghum	plastid	43.23	29.03
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	12.83	24.77
PGSC0003DMT400051253	Potato	nucleus	18.05	22.22
PGSC0003DMT400003453	Potato	nucleus, plastid	14.73	21.91
HORVU0Hr1G006890.2	Barley	cytosol	11.16	21.86
PGSC0003DMT400010453	Potato	nucleus, plastid	14.25	19.67
PGSC0003DMT400068478	Potato	nucleus	23.75	19.19
PGSC0003DMT400008673	Potato	nucleus	7.13	19.11
PGSC0003DMT400063327	Potato	nucleus, plastid	15.44	18.9
Zm00001d012725_P002	Maize	plastid	30.17	18.19
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	9.74	17.23
PGSC0003DMT400010380	Potato	nucleus	10.93	16.49
PGSC0003DMT400019324	Potato	nucleus	13.78	15.22
PGSC0003DMT400002153	Potato	nucleus	12.11	14.41
PGSC0003DMT400014572	Potato	nucleus	12.59	14.02

Protein Annotations

EntrezGene:102578818	MapMan:15.5.19	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009965	GO:GO:0009987
GO:GO:0030154	GO:GO:0045962	GO:GO:0048366	GO:GO:0048826	InterPro:IPR017887	UniProt:M1B8S2
PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400015377	PGSC:PGSC0003DMG400015377	EnsemblPlants:PGSC0003DMT400039786	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002968FF5	RefSeq:XP_006358953.1	SEG:seg

Description

SlTCP3 [Source:PGSC_GENE;Acc:PGSC0003DMG400015377]

Coordinates

chr12:+:336603..338623

Molecular Weight (calculated)

45809.3 Da

IEP (calculated)

7.318

GRAVY (calculated)

-0.595

Length

421 amino acids

Sequence
(BLAST)

001: MYQDLDKIKQ QAQSKKRSYV PPLPRPKQKV GTSSRFGGGE IVEVQGGHII RSIGRKDRHS KVCTAKGPRD RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD
101: WLIKKAKASI DELAELPPWK PTTGVTTFDQ EKDVEDDDNN GHFVGTTSKS SMIMLGQNNS ASSSGENANG SNFLPHSLDS DAISDTIKSF FPMGGGSTEG
201: NSSGMQFQSF QEHNLLSTTS SQSQDLKLSL QSFQDPVLLH NHQIEQSQAQ FQASNFFTGS TPLIGFDASV WPQPQTQHQQ QPVELGRLAA ARGAGGYTGM
301: AFGGGAIAGA NSYLFNSQPA PPLLQQLFSQ NQFLSQRGPL QSSYSPSIRA WIDPSAIAIA TADPIHHHQH HVLPMYSTSV SGIGFASEVG GFSGFRIPTR
401: IQGEIEEHDG TSDKPSSDSR H

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.