Factsheet for VIT_12s0028g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01680.t01	Wine grape	nucleus	44.95	34.67
CDY68596	Canola	cytosol, nucleus	43.0	34.2
Bra021586.1-P	Field mustard	nucleus	38.11	33.43
Bra027284.1-P	Field mustard	nucleus	43.32	32.76
CDY20097	Canola	nucleus	37.78	32.49
AT3G15030.1	Thale cress	nucleus	43.0	31.43
CDX75802	Canola	nucleus	41.04	31.19
CDX82453	Canola	nucleus	41.04	31.11
Solyc12g014140.1.1	Tomato	nucleus	39.74	30.96
Bra001579.1-P	Field mustard	nucleus	40.72	30.71
PGSC0003DMT400039786	Potato	nucleus	39.09	28.5
TraesCS3B01G164500.1	Wheat	nucleus	40.07	27.33
TraesCS3D01G146900.1	Wheat	nucleus	40.39	27.31
TraesCS3A01G140100.1	Wheat	nucleus	40.39	27.13
Zm00001d008919_P001	Maize	nucleus, plastid	37.46	27.06
VIT_10s0003g00870.t01	Wine grape	nucleus	30.62	24.61
KXG33398	Sorghum	nucleus	32.9	22.39
Zm00001d039371_P001	Maize	mitochondrion	41.04	22.3
Zm00001d043423_P001	Maize	nucleus	30.94	21.89
Os01t0213800-01	Rice	mitochondrion	40.72	21.59
Os01t0755500-01	Rice	cytosol, mitochondrion	31.27	21.52
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	40.07	20.85
OQU86111	Sorghum	plastid	42.35	20.73
HORVU0Hr1G006890.2	Barley	cytosol	13.03	18.6
VIT_14s0068g00330.t01	Wine grape	nucleus	20.52	18.05
VIT_10s0003g03910.t01	Wine grape	nucleus	24.43	16.89
VIT_17s0000g04180.t01	Wine grape	nucleus	17.92	15.03
VIT_14s0083g00150.t01	Wine grape	nucleus	15.64	14.55
Zm00001d012725_P002	Maize	plastid	29.97	13.18
VIT_01s0011g02920.t01	Wine grape	nucleus	17.26	12.1

Protein Annotations

MapMan:15.5.19	ProteinID:CBI21949	ProteinID:CBI21949.3	UniProt:E0CTN3	EMBL:FN595235	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0001BE1E8E	ArrayExpress:VIT_12s0028g02520	EnsemblPlantsGene:VIT_12s0028g02520
EnsemblPlants:VIT_12s0028g02520.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3280661..3283143

Molecular Weight (calculated)

33701.6 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.386

Length

307 amino acids

Sequence
(BLAST)

001: MKSAGGGEIV QVQGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKSSIDK LAELPPWHPI ALDPNASAGT
101: SDIGMAQQSQ ESNYVFPPLG GGGGVGGENP SNDSAFIAPP LDSDSIADTM KSFFPTSSGT SSINYQNYPP DSNHHNEDLC LSLHSFQDPD AESNHKNLFA
201: SAAQVGYETN FQRMVSWGGG GGDSESRVLL LLFVLGMSFL LLLGQCINLH SLMAGLCQME SQVFEFQHEF RVRRSIAWSQ IGHPLPPPTL ITEYTFSSNR
301: IFSRLSW

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.