Factsheet for VIT_01s0011g02920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g00150.t01	Wine grape	nucleus	29.45	39.09
VIT_17s0000g04180.t01	Wine grape	nucleus	32.19	38.52
CDY33597	Canola	nucleus	26.26	35.6
CDY45852	Canola	nucleus	25.8	34.04
Bra038350.1-P	Field mustard	nucleus	25.8	33.73
CDX81550	Canola	nucleus	25.8	33.43
AT1G68800.2	Thale cress	nucleus	27.17	32.87
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	20.78	27.58
TraesCS5D01G002300.1	Wheat	nucleus	15.07	25.0
TraesCS5A01G001900.1	Wheat	nucleus	15.53	24.91
PGSC0003DMT400019324	Potato	nucleus	20.78	23.88
HORVU5Hr1G000490.1	Barley	nucleus	15.98	23.57
Solyc04g006980.1.1	Tomato	nucleus	19.86	23.2
TraesCS5B01G002300.1	Wheat	nucleus	15.53	23.05
Solyc05g009900.1.1	Tomato	nucleus	18.49	22.95
TraesCS4B01G042700.1	Wheat	nucleus	18.26	22.6
TraesCS4D01G040100.1	Wheat	nucleus	18.04	22.44
TraesCS4A01G271300.1	Wheat	nucleus	17.81	22.16
HORVU4Hr1G007040.1	Barley	nucleus	18.04	22.13
PGSC0003DMT400002153	Potato	nucleus	17.81	22.03
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	18.72	21.58
Zm00001d013467_P001	Maize	nucleus	17.58	21.45
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.81	21.31
Os03t0706500-01	Rice	nucleus	18.26	20.62
VIT_12s0028g02520.t01	Wine grape	nucleus	12.1	17.26
VIT_14s0068g00330.t01	Wine grape	nucleus	13.24	16.62
VIT_10s0003g03910.t01	Wine grape	nucleus	14.38	14.19
VIT_19s0014g01680.t01	Wine grape	nucleus	12.33	13.57
VIT_10s0003g00870.t01	Wine grape	nucleus	11.64	13.35

Protein Annotations

MapMan:15.5.19	ProteinID:CCB50948	ProteinID:CCB50948.1	InterPro:CYC/TB1_R_domain	UniProt:F6HF18	EMBL:FN595752
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR017887
InterPro:IPR017888	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF22
InterPro:TF_TCP_subgr	TMHMM:TMhelix	InterPro:Transcription_factor_TCP	UniParc:UPI00021098B3	ArrayExpress:VIT_01s0011g02920	EnsemblPlantsGene:VIT_01s0011g02920
EnsemblPlants:VIT_01s0011g02920.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:2574244..2575738

Molecular Weight (calculated)

48352.3 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.562

Length

438 amino acids

Sequence
(BLAST)

001: MLVDRSGAQG DQSEINAAAS NKTTSVDKET SSDVVADQQQ EPLEVPPMKK SDSAKKSVPR KRTGKKDRHS KIYTAQGPRD RRMRLSLQIA RKFFDLQDIL
101: GFDKASKTIE WLFTKSKAAI KELTGNLPQI KHIGGGGTSG GTSASSISES KGTSRLKEIA HNGEPKGIVT NGESSVLTTP KEKKNRKPRS KSALNPLAKE
201: SREKARARAR ERTREKMIMR SLEKSKQCSE ANPNNLEQLV PSSPLETGEA SGSRSQEMSA SLEVVAEVEE PSTHSLEHQM ATVGIIEKFL GIPSSSTSSS
301: IFNYSPNIAV SSGVNSNNFP CFPGNWDIDD SRIHSGYSAM TNMGPSTGNF QDQNPTSVFM TTTNVRQQNP TSLFMTTSNR RLESQCYFVL MSSLLVPCLK
401: YYPFVFGRTN YDLIFTIILI IICAFFQFHI FHSLSQQI

Best Arabidopsis Sequence Match ( AT1G68800.2 )
(BLAST)

001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY

Arabidopsis Description

BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.