Factsheet for PGSC0003DMT400002153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009900.1.1	Tomato	nucleus	92.09	92.35
PGSC0003DMT400019324	Potato	nucleus	49.15	45.67
PGSC0003DMT400008673	Potato	nucleus	14.69	33.12
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	17.23	25.63
Bra038350.1-P	Field mustard	nucleus	22.32	23.58
CDY45852	Canola	nucleus	22.03	23.49
CDX81550	Canola	nucleus	22.32	23.37
AT1G68800.2	Thale cress	nucleus	23.16	22.65
CDY33597	Canola	nucleus	20.34	22.29
TraesCS5D01G002300.1	Wheat	nucleus	16.38	21.97
TraesCS5A01G001900.1	Wheat	nucleus	16.38	21.25
PGSC0003DMT400010380	Potato	nucleus	16.1	20.43
TraesCS5B01G002300.1	Wheat	nucleus	16.38	19.66
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	18.08	19.39
HORVU5Hr1G000490.1	Barley	nucleus	16.1	19.19
VIT_01s0011g02920.t01	Wine grape	nucleus	22.03	17.81
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	10.73	17.43
HORVU4Hr1G007040.1	Barley	nucleus	17.51	17.37
PGSC0003DMT400014572	Potato	nucleus	18.36	17.2
TraesCS4D01G040100.1	Wheat	nucleus	16.95	17.05
TraesCS4B01G042700.1	Wheat	nucleus	16.67	16.67
TraesCS4A01G271300.1	Wheat	nucleus	16.38	16.48
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	16.67	15.53
PGSC0003DMT400003453	Potato	nucleus, plastid	12.15	15.19
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	15.54	15.03
Os03t0706500-01	Rice	nucleus	16.38	14.95
PGSC0003DMT400024329	Potato	nucleus	12.99	14.79
Zm00001d013467_P001	Maize	nucleus	14.69	14.48
PGSC0003DMT400010453	Potato	nucleus, plastid	12.43	14.43
PGSC0003DMT400032269	Potato	nucleus	15.25	13.5
PGSC0003DMT400051253	Potato	nucleus	12.99	13.45
PGSC0003DMT400059117	Potato	nucleus	12.43	13.17
PGSC0003DMT400063327	Potato	nucleus, plastid	11.86	12.21
PGSC0003DMT400039786	Potato	nucleus	14.41	12.11
PGSC0003DMT400068478	Potato	nucleus	13.84	9.4

Protein Annotations

EntrezGene:107057911	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M0ZJQ6	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400000823	PGSC:PGSC0003DMG400000823	EnsemblPlants:PGSC0003DMT400002153	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF22	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002948742	RefSeq:XP_015158529.1
SEG:seg	:	:	:	:	:

Description

TCP transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000823]

Coordinates

chr5:-:1889590..1891173

Molecular Weight (calculated)

40649.5 Da

IEP (calculated)

8.835

GRAVY (calculated)

-0.981

Length

354 amino acids

Sequence
(BLAST)

001: MFPKSNIIHD PFTYTTQELL KQSYNTHDQN PNSPSKVVED EDHPFFLNNF FPSPFLDDHE LPLSQIFSQK HHQKQEVSDN HDINQDNTIK DNYHSVDNSR
101: STLLNMKIMG DQSSNPAILS SPSSKKRKQS AKPRRRTGKK DRHSKICTAQ GVRDRRMRLS LQIARKFFDL QDMLGFDKAS NTIEWLFSKS KNAIKELSRN
201: IPQENNSSDQ NNDDDDHRKL RKIGSSDKPI RKKTREKMMI KLGHNKKCNQ ELDETNPISS TIDHKLGSNS KSLEHQFANV GIMERYLGGA SYSSITSIFD
301: YDNNGVVKGD IDISNNCFNM GILENCSMTN EVQIPFSGNN PSSIYLDNSR FHQF

Best Arabidopsis Sequence Match ( AT1G68800.2 )
(BLAST)

001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY

Arabidopsis Description

BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.