Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012840.1.1 | Tomato | nucleus | 63.47 | 95.07 |
| Solyc10g018710.1.1 | Tomato | nucleus | 45.21 | 88.3 |
| Solyc05g032780.1.1 | Tomato | nucleus | 55.69 | 87.74 |
| Solyc02g077250.2.1 | Tomato | nucleus | 92.52 | 87.29 |
| Solyc11g045640.1.1 | Tomato | nucleus | 57.19 | 87.21 |
| GSMUA_Achr8P19990_001 | Banana | nucleus | 26.95 | 37.34 |
| PGSC0003DMT400068478 | Potato | nucleus | 47.6 | 30.52 |
| PGSC0003DMT400024329 | Potato | nucleus | 24.55 | 26.37 |
| PGSC0003DMT400032269 | Potato | nucleus | 30.84 | 25.75 |
| PGSC0003DMT400039786 | Potato | nucleus | 30.24 | 23.99 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 30.84 | 22.89 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 30.84 | 22.54 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 14.67 | 22.48 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 30.54 | 22.47 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 27.84 | 21.88 |
| Zm00001d043423_P001 | Maize | nucleus | 27.84 | 21.43 |
| KXG33398 | Sorghum | nucleus | 28.44 | 21.06 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 27.54 | 20.63 |
| PGSC0003DMT400008673 | Potato | nucleus | 9.28 | 19.75 |
| Zm00001d039371_P001 | Maize | mitochondrion | 30.84 | 18.23 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 15.27 | 18.02 |
| Os01t0213800-01 | Rice | mitochondrion | 30.24 | 17.44 |
| PGSC0003DMT400010453 | Potato | nucleus, plastid | 15.87 | 17.38 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 30.54 | 17.29 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 12.28 | 17.23 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 17.37 | 16.86 |
| OQU86111 | Sorghum | plastid | 30.24 | 16.11 |
| PGSC0003DMT400051253 | Potato | nucleus | 16.47 | 16.08 |
| PGSC0003DMT400010380 | Potato | nucleus | 11.68 | 13.98 |
| Zm00001d012725_P002 | Maize | plastid | 26.95 | 12.89 |
| PGSC0003DMT400002153 | Potato | nucleus | 13.17 | 12.43 |
| PGSC0003DMT400019324 | Potato | nucleus | 12.57 | 11.02 |
| PGSC0003DMT400014572 | Potato | nucleus | 11.98 | 10.58 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 6.59 | 10.23 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | UniProt:M1C3U2 |
| PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400022964 | PGSC:PGSC0003DMG400022964 | EnsemblPlants:PGSC0003DMT400059117 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002957857 | SEG:seg | : |
Description
Lanceolate [Source:PGSC_GENE;Acc:PGSC0003DMG400022964]
Coordinates
chr2:-:32672891..32674098
Molecular Weight (calculated)
38064.9 Da
IEP (calculated)
6.192
GRAVY (calculated)
-0.907
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHQFQVSDE EDGSEEEEEE EEEVFQENGI RNLQNHYQNQ QMPQSLCKKP AKWANFTVCE QELNKGTRRM KPKRAKTDVI EGHGGRIIRA TGRKDRHSKV
101: STARGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA LGEFPNNFHC TKLNPKKMQY SFDQEQSPRF SQENRGVPNS ENGVQHNQQE
201: VNYDIPIQNF NLFSSSDGFK IPFLSELQSY PHGHSLNFQS LQDDTILSSG NHHHQGSFLT TTSVNHFPSV LSQNQVFSHR EPLQSSFFPL MSDPLSTQLE
301: TLSYGFANDG FSGLISSASR IQGEEEQATF FSAS
101: STARGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA LGEFPNNFHC TKLNPKKMQY SFDQEQSPRF SQENRGVPNS ENGVQHNQQE
201: VNYDIPIQNF NLFSSSDGFK IPFLSELQSY PHGHSLNFQS LQDDTILSSG NHHHQGSFLT TTSVNHFPSV LSQNQVFSHR EPLQSSFFPL MSDPLSTQLE
301: TLSYGFANDG FSGLISSASR IQGEEEQATF FSAS
001: MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L
Arabidopsis Description
TCP10Transcription factor TCP10 [Source:UniProtKB/Swiss-Prot;Acc:O82277]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.