CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90936
EER93679
KXG28671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	EER90936	AT2G22840.1	21245844
AT2G31070.1	EER93679	AT2G22840.1	21245844
AT2G31070.1	KXG28671	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043423_P001	Maize	nucleus	82.48	85.71
Os01t0755500-01	Rice	cytosol, mitochondrion	70.51	71.3
Zm00001d012725_P002	Maize	plastid	83.59	54.01
HORVU0Hr1G006890.2	Barley	cytosol	25.5	53.49
GSMUA_Achr3P31370_001	Banana	nucleus	22.62	39.08
VIT_19s0014g01680.t01	Wine grape	nucleus	33.04	37.44
KRH26201	Soybean	nucleus	32.15	36.52
KRH55125	Soybean	nucleus	31.26	36.06
Solyc07g062680.1.1	Tomato	nucleus	31.71	35.75
PGSC0003DMT400032269	Potato	nucleus	31.49	35.5
Solyc05g012840.1.1	Tomato	nucleus	17.52	35.43
KRH27317	Soybean	nucleus	29.27	35.01
Bra021586.1-P	Field mustard	nucleus	26.61	34.29
AT3G15030.1	Thale cress	nucleus	31.93	34.29
KRH22307	Soybean	nucleus	25.94	34.01
KRH21998	Soybean	nucleus	29.27	33.59
Solyc12g014140.1.1	Tomato	nucleus	29.05	33.25
Bra030952.1-P	Field mustard	nucleus	25.28	33.04
KRH27017	Soybean	nucleus	25.06	32.94
Bra001579.1-P	Field mustard	nucleus	29.71	32.92
VIT_12s0028g02520.t01	Wine grape	nucleus	22.39	32.9
GSMUA_Achr7P13980_001	Banana	nucleus	26.83	32.88
Solyc07g053410.2.1	Tomato	cytosol	17.74	32.79
Bra027284.1-P	Field mustard	nucleus	29.49	32.76
Solyc10g018710.1.1	Tomato	nucleus	12.42	32.75
AT1G53230.1	Thale cress	nucleus	28.38	32.74
PGSC0003DMT400024329	Potato	nucleus	22.17	32.15
KRH25697	Soybean	nucleus	20.4	31.62
PGSC0003DMT400039786	Potato	nucleus	29.49	31.59
Solyc11g045640.1.1	Tomato	nucleus	14.41	29.68
KRH55819	Soybean	nucleus	21.51	29.13
OQU89064	Sorghum	cytosol	5.1	28.75
Bra018280.1-P	Field mustard	nucleus	22.17	28.65
PGSC0003DMT400059117	Potato	nucleus	21.06	28.44
Solyc05g032780.1.1	Tomato	nucleus	13.08	27.83
AT2G31070.1	Thale cress	nucleus	21.95	27.42
Solyc02g077250.2.1	Tomato	nucleus	21.06	26.84
CDX97627	Canola	mitochondrion	15.52	25.55
VIT_10s0003g00870.t01	Wine grape	nucleus	20.62	24.35
EES16387	Sorghum	cytosol, nucleus, plastid	15.74	23.51
OQU86111	Sorghum	plastid	32.59	23.45
EES18493	Sorghum	cytosol	14.63	22.15
KXG37409	Sorghum	cytosol	18.85	21.85
EES03657	Sorghum	nucleus	12.64	19.72
PGSC0003DMT400068478	Potato	nucleus	21.06	18.23
EER96723	Sorghum	nucleus	10.42	17.54
EES13882	Sorghum	cytosol	9.98	17.51
Solyc10g008780.1.1	Tomato	nucleus	21.73	16.84
EER95875	Sorghum	cytosol, nucleus, peroxisome	16.19	15.84
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	11.53	13.68

Protein Annotations

MapMan:15.5.19	UniProt:A0A1B6Q651	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
EnsemblPlants:KXG33398	ProteinID:KXG33398	ProteinID:KXG33398.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF16	EnsemblPlantsGene:SORBI_3003G299700	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00081AD1F1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:63077896..63082008

Molecular Weight (calculated)

47674.8 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.655

Length

451 amino acids

Sequence
(BLAST)

001: MTQGQCSTGR RGQVSLLKLE EDKNQLSKGL DPWSNPTAAT ASTLHYLLQE KERAQAQEQL QIYHQQGFSS YLQHHHRRQQ QQQQQQQSRA AAAGAGAGAD
101: GVSSGESTPV DALATAFGGG RIVRSAAGRK DRHSKVCTAR GLRDRRVRLA AHTAIRFYDV QDRLGYDRPS KAVDWLIRNA KAAIDELPAD RAEGQPAATE
201: AADATEPAEQ VTSTSSYGFG NPSGAIGGVA GSFMPHSVGS ADGGVSGSGN VKSLFPSSST ASTTPTQDEY RGSPPDLLSR TTSSHHPQEL CLTLQSTNNQ
301: QHQIFSHHVS QSHHGMISGA GVQGWSEHGQ RMPSWHAAAS ENSSAGDGRG AAGNGDSYMF GVPPRHQGLD HQGQLFSQGE PLQSSGGWPS ARAWLDPLAA
401: IHQPSTIAGQ VGGFSHLVGA GAGGFMGFLA PAAAHQRLQG EEEQGSEAMR E

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.