CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038683_P001	Maize	cytosol	91.95	91.95
Zm00001d010730_P001	Maize	cytosol, plastid	82.21	89.09
Os05t0513100-01	Rice	nucleus	67.11	68.03
HORVU1Hr1G077080.1	Barley	nucleus	58.72	59.93
TraesCS1A01G332600.1	Wheat	nucleus	59.06	57.52
TraesCS1D01G335300.1	Wheat	nucleus	59.4	56.55
TraesCS1B01G346300.1	Wheat	nucleus	58.39	56.49
EES03657	Sorghum	nucleus	51.01	52.6
Solyc02g065800.1.1	Tomato	cytosol, plastid	24.16	50.7
OQU89064	Sorghum	cytosol	11.41	42.5
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	28.52	38.99
PGSC0003DMT400003453	Potato	nucleus, plastid	33.56	35.34
Solyc02g089020.1.1	Tomato	nucleus, plastid	33.22	34.86
KRH45058	Soybean	nucleus	37.92	31.83
VIT_14s0068g00330.t01	Wine grape	nucleus	37.25	31.81
KRH01308	Soybean	cytosol	38.93	30.21
KRG93654	Soybean	nucleus	36.91	29.41
CDX74272	Canola	nucleus	30.2	28.12
CDX91977	Canola	nucleus	30.2	28.12
Bra039158.1-P	Field mustard	nucleus	28.86	27.83
AT3G02150.2	Thale cress	nucleus	30.2	25.35
CDY60475	Canola	endoplasmic reticulum, golgi	29.19	21.91
CDY43255	Canola	endoplasmic reticulum, golgi	28.86	20.05
EES16387	Sorghum	cytosol, nucleus, plastid	20.13	19.87
KXG37409	Sorghum	cytosol	25.5	19.54
EES13882	Sorghum	cytosol	15.77	18.29
EER95875	Sorghum	cytosol, nucleus, peroxisome	27.85	18.0
Bra001032.1-P	Field mustard	nucleus	29.87	16.54
KXG33398	Sorghum	nucleus	22.15	14.63
EER96723	Sorghum	nucleus	13.09	14.55
OQU86111	Sorghum	plastid	21.81	10.37
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	12.08	9.47

Protein Annotations

MapMan:15.5.19	EntrezGene:8080107	UniProt:C5Z0W3	EnsemblPlants:EES18493	ProteinID:EES18493	ProteinID:EES18493.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	ProteinID:OQU78290.1	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF67	EnsemblPlantsGene:SORBI_3009G195000	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI0001A88B6A	RefSeq:XP_002440063.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:54609609..54612384

Molecular Weight (calculated)

31250.8 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.278

Length

298 amino acids

Sequence
(BLAST)

001: MISGNLTNEE LGAGCTKAEG PTAGSGAGAV VAKSPVLSSS RHWPPSTESR IVRVSRVFGG KDRHSKVRTV KGLRDRRVRL SVPTAIQLYD LQDRLGLSQP
101: SKVVDWLLDA AQHEIDKLPP LQFPPQAQDL VAHLPPSMVA PFSNVAAAAD RAAAANASAA AMADGDKRHC HGGGIKGLMG LNNSIGLVNA TMPLAHGLYY
201: TPAGESWTTN GNNAAVHDHQ VSHHGTSPQT TVAHHSPFSS LLSLAAPGPQ LVFYSPEGGG FAMKEAADHQ FPVDSLEHSQ GQLSLSSARS FLHPGNQG

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.