Factsheet for TraesCS1D01G335300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G346300.1	Wheat	nucleus	93.61	95.13
TraesCS1A01G332600.1	Wheat	nucleus	92.33	94.44
HORVU1Hr1G077080.1	Barley	nucleus	80.19	85.96
Os05t0513100-01	Rice	nucleus	58.15	61.9
EES18493	Sorghum	cytosol	56.55	59.4
Zm00001d010730_P001	Maize	cytosol, plastid	51.76	58.91
Zm00001d038683_P001	Maize	cytosol	54.95	57.72
TraesCS3D01G298900.1	Wheat	nucleus	45.37	51.64
Solyc02g065800.1.1	Tomato	cytosol, plastid	22.04	48.59
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	24.92	35.78
PGSC0003DMT400003453	Potato	nucleus, plastid	30.03	33.22
Solyc02g089020.1.1	Tomato	nucleus, plastid	29.71	32.75
KRH45058	Soybean	nucleus	34.5	30.42
VIT_14s0068g00330.t01	Wine grape	nucleus	33.23	29.8
Bra039158.1-P	Field mustard	nucleus	27.8	28.16
KRH01308	Soybean	cytosol	33.87	27.6
KRG93654	Soybean	nucleus	31.63	26.47
CDX91977	Canola	nucleus	26.84	26.25
CDX74272	Canola	nucleus	26.84	26.25
AT3G02150.2	Thale cress	nucleus	26.84	23.66
CDY60475	Canola	endoplasmic reticulum, golgi	27.48	21.66
CDY43255	Canola	endoplasmic reticulum, golgi	28.43	20.75
TraesCS2D01G252100.1	Wheat	nucleus	26.2	19.71
TraesCS5D01G432500.1	Wheat	nucleus	24.6	19.2
TraesCS5D01G040100.1	Wheat	nucleus	17.57	18.64
TraesCS2D01G019300.1	Wheat	extracellular	13.74	18.22
Bra001032.1-P	Field mustard	nucleus	26.84	15.61
TraesCS5D01G002300.1	Wheat	nucleus	11.82	14.02
TraesCS3D01G146900.1	Wheat	nucleus	19.49	13.44
TraesCS5D01G213400.1	Wheat	cytosol	11.18	12.73
TraesCS4D01G040100.1	Wheat	nucleus	10.54	9.38

Protein Annotations

EnsemblPlants:TraesCS1D01G335300.1	EnsemblPlantsGene:TraesCS1D01G335300	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF67	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19	:

Description

No Description!

Coordinates

chr1D:+:425299582..425300882

Molecular Weight (calculated)

33701.5 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.413

Length

313 amino acids

Sequence
(BLAST)

001: MLDQSTAGAC DDERLEMISA GDHGNDRRKF EPAAASRHWS ASTESRIVRV SRVFGGKDRH SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV
101: DWLLNAAQHE IDKLPPLQFP PHDDDLLLSA HHHHHHLQPT SSMTSMAMAP PFSHATATAA AASMMVVDGD KAAQAHDGGG DLKGFMSLSN SLGLVNGAGA
201: AMPTLAAAQA GSYHHHYAAH EAWSNGGNNV HEQLGGHRSS PHVVPHHGLP FPSLLSLAPV SQFVFYTPEG GFAMKDVASD GQFPVDNLGD SQGQLSLSSR
301: GEAFFTQEAR VDR

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.