Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G265800.1 | Wheat | nucleus | 97.12 | 95.28 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 91.35 | 92.23 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 97.12 | 73.72 |
| Os03t0785800-01 | Rice | nucleus | 43.03 | 50.14 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 45.91 | 50.13 |
| KXG37409 | Sorghum | cytosol | 46.15 | 49.36 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 45.19 | 49.21 |
| Zm00001d034353_P001 | Maize | cytosol | 45.19 | 48.7 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 43.75 | 48.15 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 43.51 | 47.38 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 43.27 | 47.37 |
| TraesCS5D01G432500.1 | Wheat | nucleus | 45.43 | 47.13 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 43.03 | 46.86 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 46.63 | 43.69 |
| PGSC0003DMT400051253 | Potato | nucleus | 35.34 | 42.98 |
| AT1G30210.1 | Thale cress | nucleus | 33.41 | 42.9 |
| AT4G18390.1 | Thale cress | nucleus | 36.06 | 41.1 |
| Solyc08g048390.1.1 | Tomato | nucleus | 36.54 | 39.28 |
| KRH58674 | Soybean | nucleus | 44.23 | 38.49 |
| KRH42567 | Soybean | nucleus | 42.31 | 37.61 |
| Solyc08g048370.2.1 | Tomato | cytosol | 29.33 | 37.42 |
| TraesCS5D01G040100.1 | Wheat | nucleus | 26.2 | 36.95 |
| KRH11155 | Soybean | nucleus | 44.71 | 36.4 |
| KRH21093 | Soybean | nucleus | 44.95 | 35.15 |
| CDX78849 | Canola | nucleus, plastid | 19.23 | 33.47 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 19.23 | 33.47 |
| TraesCS3D01G298900.1 | Wheat | nucleus | 18.51 | 28.0 |
| TraesCS1D01G335300.1 | Wheat | nucleus | 19.71 | 26.2 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 13.94 | 21.97 |
| TraesCS2D01G019300.1 | Wheat | extracellular | 11.78 | 20.76 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 22.6 | 20.7 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 15.14 | 17.9 |
| TraesCS5D01G213400.1 | Wheat | cytosol | 11.06 | 16.73 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G252100.1 | EnsemblPlantsGene:TraesCS2D01G252100 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF63 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| SEG:seg | MapMan:15.5.19 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:302251939..302253502
Molecular Weight (calculated)
44661.1 Da
IEP (calculated)
9.937
GRAVY (calculated)
-0.548
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSVAAVAV ELGKRGRPDD QDQDHGDAKR LALVPWPPHQ QHPSSRIYRV SRGSGGKDRH SKVYTAKGIR DRRVRLSVAT AIQFYDLQDR LGYDQPSKAV
101: EWLIKAAAAA IDKLPELDAA AFPNHPASAN KQSSALHAEV DGSQLQQQQL TRSGCSSTSE TSKGSVLSLS RSDSRVKARE RARDRSASVK DKDDSVTAAV
201: RGRAPSAQAA SFTELLTGLA AATPAVAQHK QHNSWQQMTA SATADYLGFS QPRKSGHGML HTFASPAPHL GNIAPVAMAP AQHFSLSAGG GDSQTEMPHF
301: SFSHDHYMPV HAAPASGPAV DYSLNFSMSS GLVGVNNTRG TLQSNSQPHL SGHHHHHHQQ LQRLSTPLDA PHIPFLFSPA VAVASPTTAE SHFGAAAALQ
401: LWEGFRHSDM KEKGKN
101: EWLIKAAAAA IDKLPELDAA AFPNHPASAN KQSSALHAEV DGSQLQQQQL TRSGCSSTSE TSKGSVLSLS RSDSRVKARE RARDRSASVK DKDDSVTAAV
201: RGRAPSAQAA SFTELLTGLA AATPAVAQHK QHNSWQQMTA SATADYLGFS QPRKSGHGML HTFASPAPHL GNIAPVAMAP AQHFSLSAGG GDSQTEMPHF
301: SFSHDHYMPV HAAPASGPAV DYSLNFSMSS GLVGVNNTRG TLQSNSQPHL SGHHHHHHQQ LQRLSTPLDA PHIPFLFSPA VAVASPTTAE SHFGAAAALQ
401: LWEGFRHSDM KEKGKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.