Factsheet for TraesCS2A01G251100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G249400.1
TraesCS1B01G260100.1
TraesCS1D01G248900.1
TraesCS7A01G151700.1
TraesCS7B01G055600.1
TraesCS7D01G153500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30210.1	TraesCS7A01G151700.1	AT4G14700.1	18818695
AT1G30210.1	TraesCS7B01G055600.1	AT4G14700.1	18818695
AT1G30210.1	TraesCS7D01G153500.1	AT4G14700.1	18818695
AT1G30210.1	TraesCS1A01G249400.1	AT5G13060.1	18818695
AT1G30210.1	TraesCS1B01G260100.1	AT5G13060.1	18818695
AT1G30210.1	TraesCS1D01G248900.1	AT5G13060.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G252100.1	Wheat	nucleus	73.72	97.12
TraesCS2B01G265800.1	Wheat	nucleus	73.54	95.05
HORVU2Hr1G060120.1	Barley	nucleus	69.89	92.96
Os03t0785800-01	Rice	nucleus	32.85	50.42
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	34.49	49.61
TraesCS5A01G423900.1	Wheat	cytosol	36.13	48.89
KXG37409	Sorghum	cytosol	34.67	48.84
Zm00001d034353_P001	Maize	cytosol	33.94	48.19
GSMUA_Achr7P01160_001	Banana	nucleus	33.39	47.91
GSMUA_Achr2P12990_001	Banana	nucleus	32.66	47.35
GSMUA_Achr4P31520_001	Banana	nucleus	32.66	47.11
GSMUA_Achr4P22960_001	Banana	nucleus	32.48	46.6
GSMUA_Achr5P02530_001	Banana	nucleus	32.12	46.07
VIT_10s0003g03910.t01	Wine grape	nucleus	34.85	43.02
PGSC0003DMT400051253	Potato	nucleus	26.64	42.69
AT1G30210.1	Thale cress	nucleus	25.0	42.28
AT4G18390.1	Thale cress	nucleus	27.37	41.1
Solyc08g048390.1.1	Tomato	nucleus	27.19	38.5
KRH58674	Soybean	nucleus	33.58	38.49
Solyc08g048370.2.1	Tomato	cytosol	22.45	37.73
KRH42567	Soybean	nucleus	32.12	37.61
TraesCS5A01G031900.1	Wheat	nucleus	19.89	36.7
KRH11155	Soybean	nucleus	33.94	36.4
KRH21093	Soybean	nucleus	34.12	35.15
CDX78849	Canola	nucleus, plastid	14.6	33.47
Bra013304.1-P	Field mustard	nucleus, plastid	14.6	33.47
TraesCS3A01G302900.1	Wheat	nucleus	14.05	27.7
TraesCS1A01G332600.1	Wheat	nucleus	14.96	26.8
TraesCS2A01G018000.1	Wheat	cytosol	8.58	23.04
TraesCS5A01G001900.1	Wheat	nucleus	10.58	21.25
TraesCS3A01G140100.1	Wheat	nucleus	17.7	21.23
TraesCS4A01G271300.1	Wheat	nucleus	11.31	17.61
TraesCS5A01G207300.1	Wheat	cytosol	8.03	16.18

Protein Annotations

EnsemblPlants:TraesCS2A01G251100.1	EnsemblPlantsGene:TraesCS2A01G251100	InterPro:CYC/TB1_R_domain	InterPro:IPR017887	InterPro:IPR017888	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	PANTHER:PTHR31072	PANTHER:PTHR31072:SF63	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370
SEG:seg	MapMan:15.5.19	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:379157612..379159258

Molecular Weight (calculated)

59253.6 Da

IEP (calculated)

10.573

GRAVY (calculated)

-0.517

Length

548 amino acids

Sequence
(BLAST)

001: MGYSLLVWPI EWYAPTASFR TPPSSSLIKS GDLSLPPSLH RLLSSYSHST SPLSLPPSPR RAPSTPLPSP QGAHGIARRS VPPIPRARLP LPASPRRPAW
101: LNFATNALWV GHERHWRRLA GGPIHIRMEL SVAAAAVELG KRGRPEDQDH DQEQDHGDAK RLALVPWPPH QQHPSSRIYR VSRGSGGKDR HSKVYTAKGI
201: RDRRVRLSVA TAIQFYDLQD RLGYDQPSKA VEWLIKAAAA AIDKLPELDA AAFPNHPASA SANKQSSALH AEADGSQLQQ QQLTRSGCSS TSETSKGSVL
301: SLSRSDSRVK ARERARDRSA SVKDKDDSVT AAVRRRAPSA QAASFTELLT GLAAATPAVA QHKQHNSWQQ MTASATADYL GFSQPRKSGH GMLHTFASPA
401: PHLGNIVPVA MAPAQHFSLS AGGGDSQTDM PHFSFSQDHY MPVHAAPASA PAVDYSLNFS MCSGLVGVNN TRGTLQSNSQ PHLSGHHHHQ QQLQRLSTPL
501: DAPHIPFLFS PAVAVASPTT AESHFGAAAA LQLWEGFRHS DMKEKGKN

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.