Factsheet for Bra013304.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78849	Canola	nucleus, plastid	100.0	100.0
Bra012600.1-P	Field mustard	nucleus	88.7	55.5
Bra032365.1-P	Field mustard	nucleus	31.38	23.58
Bra010789.1-P	Field mustard	nucleus	26.36	20.45
GSMUA_Achr2P12990_001	Banana	nucleus	32.22	20.37
GSMUA_Achr7P01160_001	Banana	nucleus	31.8	19.9
HORVU2Hr1G060120.1	Barley	nucleus	33.89	19.66
GSMUA_Achr4P31520_001	Banana	nucleus	30.96	19.47
TraesCS2D01G252100.1	Wheat	nucleus	33.47	19.23
Os12t0616400-01	Rice	cytosol, nucleus, peroxisome	16.74	19.23
Os07t0152000-01	Rice	nucleus	35.56	19.1
TraesCS2B01G265800.1	Wheat	nucleus	33.47	18.87
GSMUA_Achr5P02530_001	Banana	nucleus	29.71	18.59
Zm00001d018806_P001	Maize	nucleus	33.89	18.54
Zm00001d007868_P001	Maize	nucleus	33.89	18.41
Zm00001d034353_P001	Maize	cytosol	29.29	18.13
GSMUA_Achr4P22960_001	Banana	nucleus	28.87	18.06
Zm00001d013119_P001	Maize	cytosol, nucleus, plastid	28.45	17.85
KXG37409	Sorghum	cytosol	28.45	17.48
EER95875	Sorghum	cytosol, nucleus, peroxisome	33.47	17.35
Os03t0785800-01	Rice	nucleus	24.69	16.53
HORVU5Hr1G103400.1	Barley	nucleus	26.36	15.75
TraesCS5D01G432500.1	Wheat	nucleus	25.94	15.46
TraesCS5B01G426200.1	Wheat	nucleus	25.52	15.1
TraesCS5A01G423900.1	Wheat	cytosol	25.52	15.06
TraesCS2A01G251100.1	Wheat	plastid, vacuole	33.47	14.6
EES16387	Sorghum	cytosol, nucleus, plastid	17.15	13.58
Zm00001d022256_P001	Maize	nucleus	17.57	13.0
TraesCS5D01G040100.1	Wheat	nucleus	15.9	12.88
HORVU5Hr1G008340.2	Barley	nucleus	15.9	12.88
TraesCS5B01G032000.1	Wheat	nucleus	15.9	12.67
TraesCS5A01G031900.1	Wheat	nucleus	15.48	12.46
Bra001579.1-P	Field mustard	nucleus	13.81	8.11
Bra018280.1-P	Field mustard	nucleus	11.72	8.02
Bra027284.1-P	Field mustard	nucleus	12.97	7.64
Bra030952.1-P	Field mustard	nucleus	10.46	7.25
Bra004212.1-P	Field mustard	nucleus	10.04	7.04
Bra034010.1-P	Field mustard	nucleus	10.04	6.94
Bra021586.1-P	Field mustard	nucleus	10.04	6.86
Bra004097.1-P	Field mustard	nucleus	9.62	6.63
Bra037579.1-P	Field mustard	nucleus	7.53	6.32
Bra038350.1-P	Field mustard	nucleus	7.11	5.07
Bra001710.1-P	Field mustard	nucleus	7.11	4.0
Bra039158.1-P	Field mustard	nucleus	4.6	3.56
Bra001032.1-P	Field mustard	nucleus	7.11	3.16
Bra012990.1-P	Field mustard	nucleus	3.77	2.46
Bra005967.1-P	Field mustard	nucleus, plastid	2.51	2.44
Bra029344.1-P	Field mustard	nucleus, plastid	2.51	1.99
OQU89064	Sorghum	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra013304.1	EnsemblPlants:Bra013304.1-P	EnsemblPlantsGene:Bra013304	InterPro:CYC/TB1_R_domain	InterPro:IPR017888	PANTHER:PTHR31072
PANTHER:PTHR31072:SF2	PFscan:PS51370	SEG:seg	UniParc:UPI0002546088	UniProt:M4D9Z4	MapMan:35.1

Description

AT4G18390 (E=5e-064) | TCP family transcription factor, putative

Coordinates

chrA01:-:4872809..4873528

Molecular Weight (calculated)

25793.1 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.897

Length

239 amino acids

Sequence
(BLAST)

001: MTDDENQNQT VTAAAAKSAC SSNSDTSKNS SGLSLSRSEL RDKARERARE RTAKETKERD HTGSFTDLLN SGSDPVNVNR QWMATSSSPA QMEYLTSGLI
101: LGSGQTHFPI QTSAHPFSDH HHHPQEFSFV PDHLISPAGS NGGGAFNLDF NMSSTTSAAG TAGFSGFNRG TLQSNSSNHH QQQSFLANLQ RFSSSEGGGG
201: PQFLFGALPA ENHHPNSHQF QLYYENGCRN SDQKGKGKN

Best Arabidopsis Sequence Match ( AT4G18390.2 )
(BLAST)

001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN

Arabidopsis Description

TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.