Factsheet for Bra029344.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68618	Canola	nucleus, plastid	99.0	98.68
CDY47005	Canola	nucleus, plastid	97.67	97.67
Bra012990.1-P	Field mustard	nucleus	86.05	70.77
AT5G60970.1	Thale cress	nucleus	82.72	69.17
Bra005967.1-P	Field mustard	nucleus, plastid	50.83	62.2
Solyc03g115010.1.1	Tomato	plastid	32.89	29.03
PGSC0003DMT400063327	Potato	nucleus, plastid	32.89	28.78
GSMUA_Achr4P32850_001	Banana	nucleus	30.9	27.11
Bra039158.1-P	Field mustard	nucleus	26.91	26.21
GSMUA_Achr6P27420_001	Banana	nucleus	24.58	24.75
Bra032365.1-P	Field mustard	nucleus	20.6	19.5
Bra010789.1-P	Field mustard	nucleus	19.27	18.83
Bra021586.1-P	Field mustard	nucleus	18.94	16.29
Bra030952.1-P	Field mustard	nucleus	17.61	15.36
Bra012600.1-P	Field mustard	nucleus	19.27	15.18
Bra001032.1-P	Field mustard	nucleus	26.25	14.68
Bra001579.1-P	Field mustard	nucleus	19.6	14.5
Bra027284.1-P	Field mustard	nucleus	19.27	14.29
Bra018280.1-P	Field mustard	nucleus	15.28	13.18
Bra004212.1-P	Field mustard	nucleus	14.62	12.9
Bra037579.1-P	Field mustard	nucleus	11.96	12.63
Bra034010.1-P	Field mustard	nucleus	13.62	11.85
Bra004097.1-P	Field mustard	nucleus	13.62	11.82
Bra038350.1-P	Field mustard	nucleus	12.96	11.64
Bra001710.1-P	Field mustard	nucleus	12.29	8.71
Bra013304.1-P	Field mustard	nucleus, plastid	1.99	2.51

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra029344	EnsemblPlants:Bra029344.1	EnsemblPlants:Bra029344.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4EKM7	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00025457E8	SEG:seg	:

Description

AT5G60970 (E=5e-097) TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor

Coordinates

chrA02:-:25752701..25753774

Molecular Weight (calculated)

33798.0 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.791

Length

301 amino acids

Sequence
(BLAST)

001: MRSRDCDEDE IQANQERDHN HQLNLNSMFQ PQNQPSSVPT SRQWTSAFRN PRIVRVSRTF GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS
101: QPSKVIDWLL EAAKDDVDEL PPLQFPQGFN QMYPSLIFGE SSSTSAASVF PGTNLGFLES WDLGGSSSRT RTRIADTTTT PRESFDLDKG KWIKQDENSN
201: HQDHGFDTSH QNFSLTNPYN NSNASSYYNL GHLQNSLDQS GNNVTVAIPN VPYNNNLNLP PPPTMSSLFP MYPSFLGASH HVVDGAGNLQ LFSSNANRNN
301: R

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.