Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra008860.1-P | |
| Bra023389.1-P | |
| Bra029471.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30210.1 | Bra029471.1-P | AT4G14700.1 | 18818695 |
| AT1G30210.1 | Bra008860.1-P | AT5G13060.1 | 18818695 |
| AT1G30210.1 | Bra023389.1-P | AT5G13060.1 | 18818695 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26285 | Canola | nucleus | 99.37 | 99.37 |
| CDX99891 | Canola | nucleus | 95.6 | 95.9 |
| Bra010789.1-P | Field mustard | nucleus | 75.16 | 77.6 |
| AT1G30210.1 | Thale cress | nucleus | 77.67 | 76.23 |
| Bra012600.1-P | Field mustard | nucleus | 46.86 | 39.01 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 53.46 | 38.29 |
| KRH42567 | Soybean | nucleus | 51.57 | 35.04 |
| KRH58674 | Soybean | nucleus | 51.89 | 34.52 |
| KRH11155 | Soybean | nucleus | 53.46 | 33.27 |
| KRH21093 | Soybean | nucleus | 53.46 | 31.95 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 23.58 | 31.38 |
| Bra005967.1-P | Field mustard | nucleus, plastid | 17.61 | 22.76 |
| Bra039158.1-P | Field mustard | nucleus | 20.75 | 21.36 |
| Bra029344.1-P | Field mustard | nucleus, plastid | 19.5 | 20.6 |
| Bra021586.1-P | Field mustard | nucleus | 21.07 | 19.14 |
| Bra030952.1-P | Field mustard | nucleus | 20.13 | 18.55 |
| Bra018280.1-P | Field mustard | nucleus | 20.13 | 18.34 |
| Bra004212.1-P | Field mustard | nucleus | 19.18 | 17.89 |
| Bra012990.1-P | Field mustard | nucleus | 20.13 | 17.49 |
| Bra027284.1-P | Field mustard | nucleus | 22.01 | 17.24 |
| Bra001579.1-P | Field mustard | nucleus | 21.7 | 16.95 |
| Bra037579.1-P | Field mustard | nucleus | 15.09 | 16.84 |
| Bra034010.1-P | Field mustard | nucleus | 18.24 | 16.76 |
| Bra004097.1-P | Field mustard | nucleus | 17.61 | 16.14 |
| Bra038350.1-P | Field mustard | nucleus | 16.35 | 15.52 |
| Bra001032.1-P | Field mustard | nucleus | 21.07 | 12.45 |
| Bra001710.1-P | Field mustard | nucleus | 16.04 | 12.0 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlantsGene:Bra032365 | EnsemblPlants:Bra032365.1 | EnsemblPlants:Bra032365.1-P | InterPro:CYC/TB1_R_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M4EU83 | PFAM:PF03634 |
| PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
| UniParc:UPI00025425C6 | SEG:seg | : | : | : | : |
Description
AT1G30210 (E=2e-064) TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor
Coordinates
chrA09:+:22128831..22129787
Molecular Weight (calculated)
35329.4 Da
IEP (calculated)
8.131
GRAVY (calculated)
-0.929
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDDDIDEQ QQTSRKLQRI SSDNDKNGMR DWNNPSSRII RVSRASGGKD RHSKVLTSKG LRDRRIRLSV ATAIQFYDLQ DRLGFDQPSK AVEWLINAAA
101: DSISELPPIN TSFDQALSLS KSACSSGTSE SSLLSLSRTE SRGKARERAR ERTAKDKDKD LQNAQSSFTQ LLTGGFDEPN RNWIGGSSSD CFNPVQLIPN
201: SSSSSLHHYN NNNHRQETSL NHHLSFVPDY NFGISSSDSP AAAPVNGGCY TSRGTLQSNS HSHFLNNNNV NQRPISFMAT PPPLDHHNHQ LPATFDGRLY
301: LYYGEGNRSS DDKGKDGR
101: DSISELPPIN TSFDQALSLS KSACSSGTSE SSLLSLSRTE SRGKARERAR ERTAKDKDKD LQNAQSSFTQ LLTGGFDEPN RNWIGGSSSD CFNPVQLIPN
201: SSSSSLHHYN NNNHRQETSL NHHLSFVPDY NFGISSSDSP AAAPVNGGCY TSRGTLQSNS HSHFLNNNNV NQRPISFMAT PPPLDHHNHQ LPATFDGRLY
301: LYYGEGNRSS DDKGKDGR
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.