Factsheet for Bra001710.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82339	Canola	nucleus	99.53	99.76
CDY52898	Canola	nucleus	92.47	92.47
Bra037579.1-P	Field mustard	nucleus	48.94	72.98
AT3G18550.3	Thale cress	nucleus	70.35	68.89
PGSC0003DMT400010380	Potato	nucleus	16.94	25.81
TraesCS5A01G001900.1	Wheat	nucleus	16.0	24.91
TraesCS5B01G002300.1	Wheat	nucleus	16.24	23.39
TraesCS5D01G002300.1	Wheat	nucleus	14.35	23.11
Bra038350.1-P	Field mustard	nucleus	17.88	22.69
VIT_17s0000g04180.t01	Wine grape	nucleus	19.53	22.68
Solyc03g119770.2.1	Tomato	nucleus	18.35	22.54
HORVU5Hr1G000490.1	Barley	nucleus	15.53	22.22
KRH03810	Soybean	nucleus	19.76	22.11
KRH56692	Soybean	nucleus	19.53	22.07
TraesCS4D01G040100.1	Wheat	nucleus	18.12	21.88
TraesCS4A01G271300.1	Wheat	nucleus	18.12	21.88
TraesCS4B01G042700.1	Wheat	nucleus	18.12	21.75
KRH63057	Soybean	nucleus	19.53	21.56
Solyc06g069240.1.1	Tomato	nucleus	20.0	20.94
HORVU4Hr1G007040.1	Barley	nucleus	17.41	20.73
PGSC0003DMT400014572	Potato	nucleus	18.35	20.63
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.41	20.22
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	17.88	20.0
Zm00001d013467_P001	Maize	nucleus	16.71	19.78
KRH54810	Soybean	nucleus	18.35	19.7
Os03t0706500-01	Rice	nucleus	17.41	19.07
Bra004212.1-P	Field mustard	nucleus	13.65	17.01
Bra034010.1-P	Field mustard	nucleus	13.18	16.18
Bra032365.1-P	Field mustard	nucleus	12.0	16.04
Bra004097.1-P	Field mustard	nucleus	12.71	15.56
Bra010789.1-P	Field mustard	nucleus	10.59	14.61
Bra039158.1-P	Field mustard	nucleus	10.35	14.24
Bra005967.1-P	Field mustard	nucleus, plastid	8.0	13.82
Bra012600.1-P	Field mustard	nucleus	12.24	13.61
Bra012990.1-P	Field mustard	nucleus	10.59	12.3
Bra029344.1-P	Field mustard	nucleus, plastid	8.71	12.29
Bra030952.1-P	Field mustard	nucleus	9.18	11.3
Bra021586.1-P	Field mustard	nucleus	9.18	11.14
Bra027284.1-P	Field mustard	nucleus	10.59	11.08
Bra018280.1-P	Field mustard	nucleus	8.94	10.89
Bra001579.1-P	Field mustard	nucleus	10.35	10.81
Bra001032.1-P	Field mustard	nucleus	10.59	8.36
Bra013304.1-P	Field mustard	nucleus, plastid	4.0	7.11

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra001710	EnsemblPlants:Bra001710.1	EnsemblPlants:Bra001710.1-P	InterPro:CYC/TB1_R_domain	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	UniProt:M4CBY0	PFAM:PF03634
PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000254047B	SEG:seg	:	:	:	:

Description

AT3G18550 (E=6e-126) BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1); transcription factor

Coordinates

chrA03:+:17988822..17990603

Molecular Weight (calculated)

48459.9 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.860

Length

425 amino acids

Sequence
(BLAST)

001: MNNRSFSTTT TISEDYMLFP YNDHYSSQPL LPFNPCSSIN DILIHSNSNI SSNPLDHHYQ FLQAPSSFSQ FEFVPDFALV ASFLPQNNGH NDNQTITTND
101: HNNNHHHHHP SLLPLNNPIG ESLVEPLETI ATHIEDSQRI STSQDPKMNK VKKPSRTDRH SKIKTAKGTR DRRMRLSLDV AKELFGLQDM LGFDKASKTV
201: EWLLTQAKPE IIKITSSLSN PLNHGGFSSC EESQTRPALG SMHTSSDLCK LSSMGTVEDR GSNTNSTETR GNKVDGRSMR GKRKMLQART PILKKLSKDE
301: RAKARERAKD RTKEKLMKRR SQVTVLDAEA HNQHDEIVKN NKSHVNCKSF EATPCQEETE ELLCKNDGFA VCNEFVVNKF NSSFPMPNHH RSEGTVSSIE
401: QQRQFMDLHH FLERPRDLMY NYHNM

Best Arabidopsis Sequence Match ( AT3G18550.4 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.