CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03810	Soybean	nucleus	89.36	88.42
KRH63057	Soybean	nucleus	53.19	51.95
KRH54810	Soybean	nucleus	52.66	50.0
VIT_17s0000g04180.t01	Wine grape	nucleus	35.37	36.34
PGSC0003DMT400010380	Potato	nucleus	22.34	30.11
Solyc03g119770.2.1	Tomato	nucleus	25.0	27.17
CDY18525	Canola	nucleus	20.21	26.86
Bra037579.1-P	Field mustard	nucleus	20.21	26.67
CDX95517	Canola	nucleus	19.95	26.5
TraesCS5D01G002300.1	Wheat	nucleus	18.35	26.14
TraesCS5A01G001900.1	Wheat	nucleus	18.88	26.01
PGSC0003DMT400014572	Potato	nucleus	25.0	24.87
KRH01497	Soybean	plastid	24.2	24.59
TraesCS5B01G002300.1	Wheat	nucleus	18.88	24.07
HORVU5Hr1G000490.1	Barley	nucleus	18.88	23.91
KRH45185	Soybean	plastid	23.4	23.78
TraesCS4B01G042700.1	Wheat	nucleus	21.54	22.88
TraesCS4A01G271300.1	Wheat	nucleus	21.28	22.73
KRH18263	Soybean	plastid	25.0	22.43
Solyc06g069240.1.1	Tomato	nucleus	23.94	22.17
TraesCS4D01G040100.1	Wheat	nucleus	20.74	22.16
KRG93829	Soybean	nucleus, plastid	24.47	22.12
HORVU4Hr1G007040.1	Barley	nucleus	20.48	21.57
Zm00001d013467_P001	Maize	nucleus	20.48	21.45
KRG91334	Soybean	nucleus	21.28	21.33
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	21.54	21.32
KRH35497	Soybean	nucleus	21.01	20.79
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	20.21	20.77
Os03t0706500-01	Rice	nucleus	21.28	20.62
CDY52898	Canola	nucleus	22.34	19.76
AT3G18550.3	Thale cress	nucleus	22.61	19.59
CDX82339	Canola	nucleus	22.07	19.58
Bra001710.1-P	Field mustard	nucleus	22.07	19.53
CDY62798	Canola	nucleus	20.74	18.98
KRH27017	Soybean	nucleus	15.96	17.49
KRH22307	Soybean	nucleus	15.96	17.44
KRH25697	Soybean	nucleus	13.03	16.84
KRH55125	Soybean	nucleus	15.96	15.35
KRH55819	Soybean	nucleus	13.56	15.32
KRH45058	Soybean	nucleus	14.36	15.21
KRH26201	Soybean	nucleus	15.96	15.11
KRH27317	Soybean	nucleus	14.89	14.85
KRH21998	Soybean	nucleus	14.89	14.25
KRG93654	Soybean	nucleus	14.1	14.17
KRH01308	Soybean	cytosol	14.36	14.06
KRH54711	Soybean	plastid	14.1	13.59
KRH56798	Soybean	nucleus	14.1	13.55
KRH58674	Soybean	nucleus	16.76	13.18
KRH03150	Soybean	nucleus, plastid	13.56	13.11
KRH63215	Soybean	nucleus, plastid	13.3	12.92
KRH42567	Soybean	nucleus	15.96	12.82
KRH11155	Soybean	nucleus	17.02	12.52
KRH21093	Soybean	nucleus	16.49	11.65

Protein Annotations

EntrezGene:100803669	MapMan:15.5.19	EMBL:ACUP02002797	InterPro:CYC/TB1_R_domain	EnsemblPlantsGene:GLYMA_05G013300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	UniProt:K7KNH4	ProteinID:KRH56691.1
EnsemblPlants:KRH56692	ProteinID:KRH56692	ProteinID:KRH56692.1	ProteinID:KRH56693.1	PFAM:PF03634	PFscan:PS51369
PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00023C5676
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1241512..1244692

Molecular Weight (calculated)

42499.5 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.847

Length

376 amino acids

Sequence
(BLAST)

001: MYSSNTSLNG NELISYPNQP FCFRPFSFES NPTNSSKEET NSNYALPLPP PPPLLSFFQS PFDENIFQEH HHDFLLLHHS LADSGVLTKN LDVAAEISPI
101: PCPGEGSIAM EHTPRKRSSK RDRHSKINTA RGLRDRRMRL SLEVAKRFFG LQDMLGFDKA SKTVDWLLNQ AKGEIKQLGR EKTSVGGAKS ASSTSECEGV
201: SSLDEVVVSG GVNEEQERET VPNMKRRTNK VCRKSAFNPI DKESREKARE RARERTREKM RTRRVLADAS NLNRLSSWNP FETVEDSAGT THQSQSVNHP
301: SLDVHLPEAD QEPSSHNAKE HWGENMAHED NSLAIMNKWS PTMMFNSLHN SGVLQEHQFA EFQSLGKPWE AYSNHI

Best Arabidopsis Sequence Match ( AT3G18550.2 )
(BLAST)

001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK
301: MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN
401: SIEQHQFTDL HYSFGAKPRD LMHNYQNMY

Arabidopsis Description

BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.