Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18525 | Canola | nucleus | 97.88 | 97.88 |
| Bra037579.1-P | Field mustard | nucleus | 97.53 | 96.84 |
| CDX82339 | Canola | nucleus | 72.08 | 48.11 |
| CDY52898 | Canola | nucleus | 69.96 | 46.59 |
| CDY62798 | Canola | nucleus | 67.14 | 46.23 |
| AT3G18550.3 | Thale cress | nucleus | 67.49 | 44.01 |
| PGSC0003DMT400010380 | Potato | nucleus | 24.73 | 25.09 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 20.85 | 21.61 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 19.43 | 20.83 |
| KRH03810 | Soybean | nucleus | 27.21 | 20.26 |
| Solyc03g119770.2.1 | Tomato | nucleus | 24.73 | 20.23 |
| VIT_17s0000g04180.t01 | Wine grape | nucleus | 26.15 | 20.22 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 20.85 | 20.0 |
| KRH56692 | Soybean | nucleus | 26.5 | 19.95 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 20.49 | 19.53 |
| KRH63057 | Soybean | nucleus | 26.5 | 19.48 |
| KRH54810 | Soybean | nucleus | 26.15 | 18.69 |
| CDY33597 | Canola | nucleus | 21.2 | 18.58 |
| PGSC0003DMT400014572 | Potato | nucleus | 24.73 | 18.52 |
| Solyc06g069240.1.1 | Tomato | nucleus | 26.15 | 18.23 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 22.61 | 18.08 |
| CDY45852 | Canola | nucleus | 21.2 | 18.07 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 22.26 | 17.9 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 22.26 | 17.9 |
| CDX81550 | Canola | nucleus | 20.85 | 17.46 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 21.91 | 17.37 |
| Zm00001d013467_P001 | Maize | nucleus | 21.91 | 17.27 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 22.26 | 17.21 |
| Os03t0706500-01 | Rice | nucleus | 23.32 | 17.01 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 22.61 | 16.84 |
| CDY12633 | Canola | nucleus | 18.02 | 15.84 |
| CDY46042 | Canola | nucleus | 19.08 | 15.61 |
| CDY01793 | Canola | nucleus | 19.43 | 15.58 |
| CDX99891 | Canola | nucleus | 17.31 | 15.46 |
| CDX96104 | Canola | nucleus | 18.73 | 15.1 |
| CDY26285 | Canola | nucleus | 16.96 | 15.09 |
| CDY07432 | Canola | nucleus | 18.37 | 14.77 |
| CDY28898 | Canola | nucleus | 18.02 | 14.41 |
| CDY60877 | Canola | nucleus | 17.67 | 13.97 |
| CDX81083 | Canola | nucleus, plastid | 12.01 | 13.93 |
| CDY59229 | Canola | nucleus | 15.19 | 13.74 |
| CDX74272 | Canola | nucleus | 15.19 | 13.44 |
| CDX91977 | Canola | nucleus | 15.19 | 13.44 |
| CDX78321 | Canola | nucleus, plastid | 11.66 | 13.41 |
| CDX90234 | Canola | nucleus | 14.49 | 13.31 |
| CDY01537 | Canola | nucleus | 13.78 | 12.7 |
| CDY55633 | Canola | nucleus | 16.25 | 12.04 |
| CDY58696 | Canola | nucleus | 15.19 | 11.81 |
| CDY47005 | Canola | nucleus, plastid | 12.37 | 11.63 |
| CDY68618 | Canola | nucleus, plastid | 12.37 | 11.59 |
| CDY02180 | Canola | nucleus | 14.49 | 11.2 |
| CDY10771 | Canola | nucleus | 13.07 | 10.66 |
| CDY24724 | Canola | nucleus | 13.07 | 10.63 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 14.84 | 10.58 |
| CDY10772 | Canola | nucleus | 12.72 | 10.4 |
| CDY68596 | Canola | cytosol, nucleus | 14.13 | 10.36 |
| CDX75802 | Canola | nucleus | 14.49 | 10.15 |
| CDX82453 | Canola | nucleus | 14.49 | 10.12 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 15.19 | 10.02 |
| CDY20097 | Canola | nucleus | 12.37 | 9.8 |
| CDY02519 | Canola | nucleus | 11.66 | 9.59 |
| CDX78849 | Canola | nucleus, plastid | 6.36 | 7.53 |
| CDX97627 | Canola | mitochondrion | 2.47 | 2.55 |
Protein Annotations
| EnsemblPlants:CDX95517 | EnsemblPlantsGene:GSBRNA2T00101329001 | InterPro:CYC/TB1_R_domain | InterPro:IPR017887 | InterPro:IPR017888 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF41 | PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 |
| ProteinID:CDX95517 | ProteinID:CDX95517.1 | SEG:seg | UniParc:UPI0004EF2F67 | MapMan:15.5.19 | : |
Description
BnaC01g34090D
Coordinates
chrLK031889:-:899021..900740
Molecular Weight (calculated)
32440.4 Da
IEP (calculated)
10.161
GRAVY (calculated)
-0.963
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNAKKPSRT DRHSKIKTAK GTRDRRMRLS LDVAKELFGL QDMLGFDKAS KTVEWLLTQA KPEIIKIANS LSNQFKHGGF SSGDDSQTRP ALGSTETSSD
101: LCEFASVWTV EDRCSNTSMT ENKVDGRTMR GKRKMSQRTP ILKEMSKDAR AKARERAKDR TMEKIMKRRP QVNAVEEVEA HNQHDEVVKN NNSGVNWTTS
201: FEVTPSGKNM EELCKNNRFA VYNDIVVNKK DHISEESYNM ISQLNSSFPM LTHHRSQGAA TSMEQQQHQV RDVHHFLYNY HNM
101: LCEFASVWTV EDRCSNTSMT ENKVDGRTMR GKRKMSQRTP ILKEMSKDAR AKARERAKDR TMEKIMKRRP QVNAVEEVEA HNQHDEVVKN NNSGVNWTTS
201: FEVTPSGKNM EELCKNNRFA VYNDIVVNKK DHISEESYNM ISQLNSSFPM LTHHRSQGAA TSMEQQQHQV RDVHHFLYNY HNM
001: MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
101: HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK
201: PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR
301: TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ
401: GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
Arabidopsis Description
BRC1TCP family transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.