Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010789.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY59229 | Canola | nucleus | 94.81 | 93.29 |
| CDX99891 | Canola | nucleus | 78.25 | 76.03 |
| CDY26285 | Canola | nucleus | 77.6 | 75.16 |
| AT1G30210.1 | Thale cress | nucleus | 78.25 | 74.38 |
| CDY60877 | Canola | nucleus | 40.91 | 35.2 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 50.65 | 35.14 |
| CDY55633 | Canola | nucleus | 40.58 | 32.72 |
| CDY01537 | Canola | nucleus | 32.47 | 32.57 |
| KRH42567 | Soybean | nucleus | 49.35 | 32.48 |
| KRH58674 | Soybean | nucleus | 50.0 | 32.22 |
| KRH11155 | Soybean | nucleus | 50.97 | 30.72 |
| KRH21093 | Soybean | nucleus | 50.97 | 29.51 |
| CDX78849 | Canola | nucleus, plastid | 20.45 | 26.36 |
| CDX81083 | Canola | nucleus, plastid | 16.88 | 21.31 |
| CDX78321 | Canola | nucleus, plastid | 16.56 | 20.73 |
| CDX74272 | Canola | nucleus | 21.43 | 20.62 |
| CDX91977 | Canola | nucleus | 21.43 | 20.62 |
| CDY20097 | Canola | nucleus | 23.05 | 19.89 |
| CDY02519 | Canola | nucleus | 22.08 | 19.77 |
| CDY10772 | Canola | nucleus | 21.75 | 19.36 |
| CDY47005 | Canola | nucleus, plastid | 18.83 | 19.27 |
| CDY68618 | Canola | nucleus, plastid | 18.83 | 19.21 |
| CDY10771 | Canola | nucleus | 21.43 | 19.02 |
| CDY24724 | Canola | nucleus | 21.43 | 18.97 |
| CDY68596 | Canola | cytosol, nucleus | 23.05 | 18.39 |
| CDX82453 | Canola | nucleus | 24.03 | 18.27 |
| CDX75802 | Canola | nucleus | 23.7 | 18.07 |
| CDY58696 | Canola | nucleus | 20.78 | 17.58 |
| CDY02180 | Canola | nucleus | 20.45 | 17.21 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 20.78 | 16.12 |
| CDY01793 | Canola | nucleus | 18.18 | 15.86 |
| CDY12633 | Canola | nucleus | 16.56 | 15.84 |
| CDX96104 | Canola | nucleus | 17.86 | 15.67 |
| CDY33597 | Canola | nucleus | 16.23 | 15.48 |
| CDY46042 | Canola | nucleus | 16.56 | 14.74 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 20.45 | 14.69 |
| CDX81550 | Canola | nucleus | 15.91 | 14.5 |
| CDY07432 | Canola | nucleus | 16.56 | 14.49 |
| CDX95517 | Canola | nucleus | 13.31 | 14.49 |
| CDY18525 | Canola | nucleus | 13.31 | 14.49 |
| CDY45852 | Canola | nucleus | 15.58 | 14.46 |
| CDY28898 | Canola | nucleus | 15.91 | 13.84 |
| CDY52898 | Canola | nucleus | 14.94 | 10.82 |
| CDY62798 | Canola | nucleus | 14.29 | 10.71 |
| CDX82339 | Canola | nucleus | 14.61 | 10.61 |
| CDX97627 | Canola | mitochondrion | 7.47 | 8.39 |
Protein Annotations
| EnsemblPlants:CDX90234 | EnsemblPlantsGene:GSBRNA2T00150797001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX90234 | ProteinID:CDX90234.1 | SEG:seg |
| UniParc:UPI0002546F1D | MapMan:15.5.19 | : | : | : | : |
Description
BnaA08g17500D
Coordinates
chrLK031862:-:778301..779908
Molecular Weight (calculated)
34412.3 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.921
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SNPSSRIIRV SRATGGKDRH SKVLTSKGLR DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS
101: ISDLNPIDTN FEQTLSLSKS STSESSLLSL SRTESRGKAR ERTAKDKDLQ SSFTQLLTRG FDESNRSWTG GGSSDCFNPV QLIPSSLNHR QEPSLNHSNS
201: QNQYSFLPNY NVGISSSDSP GEAGCYSSRG TLQSNSLPLF LNNNINQRSI SSSSSSSSPM DSQSISFFMS PPLHNHSHDQ LPEAFDGRLY LYYGEGNRSS
301: DDKGKERR
101: ISDLNPIDTN FEQTLSLSKS STSESSLLSL SRTESRGKAR ERTAKDKDLQ SSFTQLLTRG FDESNRSWTG GGSSDCFNPV QLIPSSLNHR QEPSLNHSNS
201: QNQYSFLPNY NVGISSSDSP GEAGCYSSRG TLQSNSLPLF LNNNINQRSI SSSSSSSSPM DSQSISFFMS PPLHNHSHDQ LPEAFDGRLY LYYGEGNRSS
301: DDKGKERR
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.