Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021586.1-P | Field mustard | nucleus | 96.08 | 98.0 |
| CDY68596 | Canola | cytosol, nucleus | 78.99 | 73.06 |
| CDX75802 | Canola | nucleus | 81.23 | 71.78 |
| CDX82453 | Canola | nucleus | 81.23 | 71.6 |
| AT3G15030.1 | Thale cress | nucleus | 81.79 | 69.52 |
| CDX97627 | Canola | mitochondrion | 53.22 | 69.34 |
| CDY02519 | Canola | nucleus | 52.1 | 54.07 |
| Solyc12g014140.1.1 | Tomato | nucleus | 44.54 | 40.36 |
| PGSC0003DMT400039786 | Potato | nucleus | 45.1 | 38.24 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 32.49 | 37.78 |
| CDY10772 | Canola | nucleus | 32.77 | 33.81 |
| CDY10771 | Canola | nucleus | 32.49 | 33.43 |
| CDY24724 | Canola | nucleus | 32.49 | 33.33 |
| CDX81083 | Canola | nucleus, plastid | 16.25 | 23.77 |
| CDX78321 | Canola | nucleus, plastid | 16.25 | 23.58 |
| CDX90234 | Canola | nucleus | 19.89 | 23.05 |
| CDY59229 | Canola | nucleus | 19.61 | 22.36 |
| CDX99891 | Canola | nucleus | 18.77 | 21.14 |
| CDY26285 | Canola | nucleus | 18.77 | 21.07 |
| CDY01537 | Canola | nucleus | 17.65 | 20.52 |
| CDY60877 | Canola | nucleus | 20.45 | 20.39 |
| CDY55633 | Canola | nucleus | 20.45 | 19.11 |
| CDX91977 | Canola | nucleus | 17.09 | 19.06 |
| CDX74272 | Canola | nucleus | 17.09 | 19.06 |
| CDY47005 | Canola | nucleus, plastid | 15.97 | 18.94 |
| CDY68618 | Canola | nucleus, plastid | 15.97 | 18.87 |
| CDY58696 | Canola | nucleus | 17.37 | 17.03 |
| CDY02180 | Canola | nucleus | 17.37 | 16.94 |
| CDY01793 | Canola | nucleus | 16.53 | 16.71 |
| CDY12633 | Canola | nucleus | 14.85 | 16.46 |
| CDX96104 | Canola | nucleus | 15.69 | 15.95 |
| CDY46042 | Canola | nucleus | 15.41 | 15.9 |
| CDY07432 | Canola | nucleus | 14.85 | 15.06 |
| CDY28898 | Canola | nucleus | 14.85 | 14.97 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 16.53 | 14.86 |
| CDX81550 | Canola | nucleus | 13.73 | 14.5 |
| CDY45852 | Canola | nucleus | 12.61 | 13.55 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 16.25 | 13.52 |
| CDY33597 | Canola | nucleus | 12.04 | 13.31 |
| CDY18525 | Canola | nucleus | 9.8 | 12.37 |
| CDX95517 | Canola | nucleus | 9.8 | 12.37 |
| CDX78849 | Canola | nucleus, plastid | 6.72 | 10.04 |
| CDX82339 | Canola | nucleus | 11.2 | 9.43 |
| CDY52898 | Canola | nucleus | 11.2 | 9.41 |
| CDY62798 | Canola | nucleus | 10.08 | 8.76 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078G546 | EnsemblPlants:CDY20097 | ProteinID:CDY20097 | ProteinID:CDY20097.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00009950001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF13 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EDAF5D | SEG:seg |
Description
BnaA01g29050DBnaA01g29050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G546]
Coordinates
chrLK032103:+:144194..145994
Molecular Weight (calculated)
38913.0 Da
IEP (calculated)
7.451
GRAVY (calculated)
-0.724
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDHGEAHH FLHPQPPPPS SMRHRAASDE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIRKAQTSI
101: DELAQLPPWS PADAVRNAAA NAKPRRTAAK TKISPSPPPP QREQLQFGGA RSGGFDGAAE LPSFLPPSTD SESFFPVVGS STEAPPSQDL RLSLHSFPDG
201: PPSLHHHHHH HHSAPEPVLF YGQSNPFGYD GWEQQSIQRL VACNGGGATD TGNGGGGFLF APSPTTSYQP VLGQSQLCPQ RGPLQSSYTP MIRAWFDPHH
301: HQSISTEDLS HHIPPLVFAS GEFSSGFRVP ARFQGQEEEQ QDGLTNKPSS ASSVSRH
101: DELAQLPPWS PADAVRNAAA NAKPRRTAAK TKISPSPPPP QREQLQFGGA RSGGFDGAAE LPSFLPPSTD SESFFPVVGS STEAPPSQDL RLSLHSFPDG
201: PPSLHHHHHH HHSAPEPVLF YGQSNPFGYD GWEQQSIQRL VACNGGGATD TGNGGGGFLF APSPTTSYQP VLGQSQLCPQ RGPLQSSYTP MIRAWFDPHH
301: HQSISTEDLS HHIPPLVFAS GEFSSGFRVP ARFQGQEEEQ QDGLTNKPSS ASSVSRH
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.