Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78849 | Canola | nucleus, plastid | 64.25 | 96.23 |
| Bra012600.1-P | Field mustard | nucleus | 88.83 | 83.25 |
| AT4G18390.1 | Thale cress | nucleus | 84.64 | 83.01 |
| CDY55633 | Canola | nucleus | 87.71 | 82.2 |
| CDY01537 | Canola | nucleus | 55.87 | 65.15 |
| CDX99891 | Canola | nucleus | 39.94 | 45.11 |
| CDY26285 | Canola | nucleus | 39.66 | 44.65 |
| CDY59229 | Canola | nucleus | 36.03 | 41.21 |
| PGSC0003DMT400051253 | Potato | nucleus | 39.11 | 40.94 |
| CDX90234 | Canola | nucleus | 35.2 | 40.91 |
| Solyc08g048390.1.1 | Tomato | nucleus | 41.06 | 37.98 |
| Solyc08g048370.2.1 | Tomato | cytosol | 33.24 | 36.5 |
| CDY10772 | Canola | nucleus | 21.79 | 22.54 |
| CDX91977 | Canola | nucleus | 20.11 | 22.5 |
| CDX74272 | Canola | nucleus | 20.11 | 22.5 |
| CDY10771 | Canola | nucleus | 21.79 | 22.48 |
| CDY24724 | Canola | nucleus | 21.79 | 22.41 |
| CDY02519 | Canola | nucleus | 20.67 | 21.51 |
| CDX81083 | Canola | nucleus, plastid | 14.53 | 21.31 |
| CDX78321 | Canola | nucleus, plastid | 14.53 | 21.14 |
| CDX75802 | Canola | nucleus | 23.46 | 20.79 |
| CDX82453 | Canola | nucleus | 23.46 | 20.74 |
| CDY68596 | Canola | cytosol, nucleus | 22.07 | 20.47 |
| CDY20097 | Canola | nucleus | 20.39 | 20.45 |
| CDY01793 | Canola | nucleus | 19.27 | 19.55 |
| CDY47005 | Canola | nucleus, plastid | 16.2 | 19.27 |
| CDY68618 | Canola | nucleus, plastid | 15.92 | 18.87 |
| CDY12633 | Canola | nucleus | 16.76 | 18.63 |
| CDX96104 | Canola | nucleus | 18.16 | 18.52 |
| CDY46042 | Canola | nucleus | 17.6 | 18.21 |
| CDY07432 | Canola | nucleus | 17.6 | 17.9 |
| CDX95517 | Canola | nucleus | 13.97 | 17.67 |
| CDY18525 | Canola | nucleus | 13.97 | 17.67 |
| CDY28898 | Canola | nucleus | 17.32 | 17.51 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 18.72 | 16.88 |
| CDY02180 | Canola | nucleus | 17.04 | 16.67 |
| CDY58696 | Canola | nucleus | 16.76 | 16.48 |
| CDY33597 | Canola | nucleus | 14.53 | 16.1 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 18.99 | 15.85 |
| CDX81550 | Canola | nucleus | 14.8 | 15.68 |
| CDY45852 | Canola | nucleus | 14.53 | 15.66 |
| CDY52898 | Canola | nucleus | 15.08 | 12.71 |
| CDY62798 | Canola | nucleus | 14.25 | 12.41 |
| CDX82339 | Canola | nucleus | 14.53 | 12.26 |
| CDX97627 | Canola | mitochondrion | 8.66 | 11.31 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078J9T5 | EnsemblPlants:CDY60877 | ProteinID:CDY60877 | ProteinID:CDY60877.1 | InterPro:CYC/TB1_R_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00030217001 | InterPro:IPR017887 | InterPro:IPR017888 |
| PFAM:PF03634 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI0004EB3003 | SEG:seg | : | : | : |
Description
BnaC01g40850DBnaC01g40850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9T5]
Coordinates
chrLK033926:-:10308..12591
Molecular Weight (calculated)
39148.8 Da
IEP (calculated)
8.313
GRAVY (calculated)
-0.849
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPKTGDDVI IGDLMKTNNG DVVDNNNNSN RLSRWHHNSS RIIRVSRASG GKDRHSKVWT SKGPRDRRVR LSVSTALQFY DLQDRLGLDQ PSKAVEWLIK
101: AAEDSISELP SLNNTNFPMT DDENQNQTVT GAAKSACSSN SDTSKNSSGL SLSRSELRDK ARERARERTA KETKERDHTG SFTDLLNSGS DPVNVNRQWM
201: VSSSSPAQME YLSSGLILGS GQTHFPIQTN AHPFSDHHHH PQEFSFVPDH LISPAGSNGG GAFNLDFNMS TTSGAGTAVA SAGFSGFNRG TLQSNSSNHH
301: QQSFLANLQR FSSSEGGGGP QFLFGALPAE NHHPNSHQFQ LYYENGCRNS DQKGKGKN
101: AAEDSISELP SLNNTNFPMT DDENQNQTVT GAAKSACSSN SDTSKNSSGL SLSRSELRDK ARERARERTA KETKERDHTG SFTDLLNSGS DPVNVNRQWM
201: VSSSSPAQME YLSSGLILGS GQTHFPIQTN AHPFSDHHHH PQEFSFVPDH LISPAGSNGG GAFNLDFNMS TTSGAGTAVA SAGFSGFNRG TLQSNSSNHH
301: QQSFLANLQR FSSSEGGGGP QFLFGALPAE NHHPNSHQFQ LYYENGCRNS DQKGKGKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.