Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001579.1-P | Field mustard | nucleus | 99.51 | 99.02 |
| CDX75802 | Canola | nucleus | 97.78 | 98.02 |
| CDY68596 | Canola | cytosol, nucleus | 82.72 | 86.79 |
| CDX97627 | Canola | mitochondrion | 57.04 | 84.31 |
| CDY20097 | Canola | nucleus | 71.6 | 81.23 |
| AT3G15030.1 | Thale cress | nucleus | 83.21 | 80.24 |
| CDY02519 | Canola | nucleus | 49.63 | 58.43 |
| Solyc12g014140.1.1 | Tomato | nucleus | 43.21 | 44.42 |
| PGSC0003DMT400039786 | Potato | nucleus | 44.44 | 42.76 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 31.11 | 41.04 |
| CDY10772 | Canola | nucleus | 32.35 | 37.86 |
| CDY10771 | Canola | nucleus | 32.35 | 37.75 |
| CDY24724 | Canola | nucleus | 32.35 | 37.64 |
| CDX81083 | Canola | nucleus, plastid | 15.06 | 25.0 |
| CDX78321 | Canola | nucleus, plastid | 15.06 | 24.8 |
| CDX90234 | Canola | nucleus | 18.27 | 24.03 |
| CDY60877 | Canola | nucleus | 20.74 | 23.46 |
| CDY59229 | Canola | nucleus | 18.02 | 23.32 |
| CDY01537 | Canola | nucleus | 17.04 | 22.48 |
| CDX99891 | Canola | nucleus | 17.28 | 22.08 |
| CDY26285 | Canola | nucleus | 17.28 | 22.01 |
| CDY55633 | Canola | nucleus | 20.74 | 21.99 |
| CDX74272 | Canola | nucleus | 16.54 | 20.94 |
| CDX91977 | Canola | nucleus | 16.54 | 20.94 |
| CDY47005 | Canola | nucleus, plastid | 15.06 | 20.27 |
| CDY68618 | Canola | nucleus, plastid | 14.81 | 19.87 |
| CDY12633 | Canola | nucleus | 14.32 | 18.01 |
| CDY58696 | Canola | nucleus | 16.05 | 17.86 |
| CDY02180 | Canola | nucleus | 15.8 | 17.49 |
| CDY46042 | Canola | nucleus | 14.57 | 17.05 |
| CDY01793 | Canola | nucleus | 14.81 | 17.0 |
| CDX96104 | Canola | nucleus | 14.57 | 16.81 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 16.05 | 16.37 |
| CDY07432 | Canola | nucleus | 13.83 | 15.91 |
| CDY28898 | Canola | nucleus | 13.83 | 15.82 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 15.8 | 14.92 |
| CDY33597 | Canola | nucleus | 11.6 | 14.55 |
| CDX81550 | Canola | nucleus | 12.1 | 14.5 |
| CDY18525 | Canola | nucleus | 10.12 | 14.49 |
| CDX95517 | Canola | nucleus | 10.12 | 14.49 |
| CDY45852 | Canola | nucleus | 11.85 | 14.46 |
| CDX78849 | Canola | nucleus, plastid | 8.15 | 13.81 |
| CDX82339 | Canola | nucleus | 10.86 | 10.38 |
| CDY52898 | Canola | nucleus | 10.86 | 10.35 |
| CDY62798 | Canola | nucleus | 9.88 | 9.73 |
Protein Annotations
| EnsemblPlants:CDX82453 | EnsemblPlantsGene:GSBRNA2T00137591001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF13 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX82453 | ProteinID:CDX82453.1 | SEG:seg |
| UniParc:UPI0004EE8D8D | MapMan:15.5.19 | : | : | : | : |
Description
BnaA03g33680D
Coordinates
chrLK031828:-:1351965..1354051
Molecular Weight (calculated)
44199.0 Da
IEP (calculated)
8.017
GRAVY (calculated)
-0.798
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDDEAHRF LHPPAPPSSS SMRRRATSEA ANGGCGEIVE VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF YDVQDRLGFD RPSKAVDWLI
101: KKAKTSIDEL AQLPPWDPAD AIRNAAANAK PRRTAAKARV SPSPPPQQLQ FSGGTAVGFA GATERRSNDN NQSSFLPPSM DSDSIADTIK SFFPVVGSTA
201: EAPPHQLMHN YHHHHPPDLL SRTNSQNQDL RLSLQPFPDG PPSLLHHHSV AEPVLFYGQS NPLGYDTSTG GWEQQSIQRL VAWNSGGAND TGNGGGGGGF
301: LFAPPPNHPT STTSFQPVLG QSQLYSQRGP LQSSYSPMIR AWFDPTHHHH QSISTDDLNH HHHHMPPPIA SGEFSSGFRV PARFQGQEEE QHDGLNNKPS
401: SASRH
101: KKAKTSIDEL AQLPPWDPAD AIRNAAANAK PRRTAAKARV SPSPPPQQLQ FSGGTAVGFA GATERRSNDN NQSSFLPPSM DSDSIADTIK SFFPVVGSTA
201: EAPPHQLMHN YHHHHPPDLL SRTNSQNQDL RLSLQPFPDG PPSLLHHHSV AEPVLFYGQS NPLGYDTSTG GWEQQSIQRL VAWNSGGAND TGNGGGGGGF
301: LFAPPPNHPT STTSFQPVLG QSQLYSQRGP LQSSYSPMIR AWFDPTHHHH QSISTDDLNH HHHHMPPPIA SGEFSSGFRV PARFQGQEEE QHDGLNNKPS
401: SASRH
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.