Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010789.1-P | Field mustard | nucleus | 93.29 | 94.81 |
| CDX90234 | Canola | nucleus | 93.29 | 94.81 |
| CDX99891 | Canola | nucleus | 77.96 | 76.97 |
| CDY26285 | Canola | nucleus | 77.64 | 76.42 |
| AT1G30210.1 | Thale cress | nucleus | 77.96 | 75.31 |
| CDY60877 | Canola | nucleus | 41.21 | 36.03 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 50.8 | 35.81 |
| CDY55633 | Canola | nucleus | 41.53 | 34.03 |
| KRH42567 | Soybean | nucleus | 49.2 | 32.91 |
| CDY01537 | Canola | nucleus | 32.27 | 32.9 |
| KRH58674 | Soybean | nucleus | 50.16 | 32.85 |
| KRH11155 | Soybean | nucleus | 50.8 | 31.12 |
| KRH21093 | Soybean | nucleus | 50.8 | 29.89 |
| CDX78849 | Canola | nucleus, plastid | 20.13 | 26.36 |
| CDX81083 | Canola | nucleus, plastid | 16.93 | 21.72 |
| CDX78321 | Canola | nucleus, plastid | 16.93 | 21.54 |
| CDX74272 | Canola | nucleus | 21.41 | 20.94 |
| CDX91977 | Canola | nucleus | 21.41 | 20.94 |
| CDY47005 | Canola | nucleus, plastid | 19.17 | 19.93 |
| CDY68618 | Canola | nucleus, plastid | 19.17 | 19.87 |
| CDY02519 | Canola | nucleus | 21.73 | 19.77 |
| CDY20097 | Canola | nucleus | 22.36 | 19.61 |
| CDY10772 | Canola | nucleus | 21.09 | 19.08 |
| CDY10771 | Canola | nucleus | 20.77 | 18.73 |
| CDY24724 | Canola | nucleus | 20.77 | 18.68 |
| CDY68596 | Canola | cytosol, nucleus | 22.36 | 18.13 |
| CDY58696 | Canola | nucleus | 21.09 | 18.13 |
| CDX82453 | Canola | nucleus | 23.32 | 18.02 |
| CDX75802 | Canola | nucleus | 23.0 | 17.82 |
| CDY02180 | Canola | nucleus | 20.77 | 17.76 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 20.77 | 16.37 |
| CDY01793 | Canola | nucleus | 18.21 | 16.15 |
| CDX96104 | Canola | nucleus | 17.89 | 15.95 |
| CDY12633 | Canola | nucleus | 15.97 | 15.53 |
| CDY33597 | Canola | nucleus | 15.97 | 15.48 |
| CDX95517 | Canola | nucleus | 13.74 | 15.19 |
| CDY18525 | Canola | nucleus | 13.74 | 15.19 |
| CDY46042 | Canola | nucleus | 16.61 | 15.03 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 20.45 | 14.92 |
| CDY07432 | Canola | nucleus | 16.61 | 14.77 |
| CDX81550 | Canola | nucleus | 15.65 | 14.5 |
| CDY45852 | Canola | nucleus | 15.34 | 14.46 |
| CDY28898 | Canola | nucleus | 15.97 | 14.12 |
| CDY52898 | Canola | nucleus | 15.34 | 11.29 |
| CDY62798 | Canola | nucleus | 14.7 | 11.19 |
| CDX82339 | Canola | nucleus | 15.02 | 11.08 |
| CDX97627 | Canola | mitochondrion | 7.35 | 8.39 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078J4Z0 | EnsemblPlants:CDY59229 | ProteinID:CDY59229 | ProteinID:CDY59229.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00025745001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF2 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF11D7 | SEG:seg |
Description
BnaCnng34520DBnaCnng34520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Z0]
Coordinates
chrLK033742:-:17673..19707
Molecular Weight (calculated)
35101.1 Da
IEP (calculated)
8.656
GRAVY (calculated)
-1.004
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDDIETQ QQQQQTSRKL QRLSSDKTET RDWSNPSSRI IRVSRASGGK DRHSKVLTSK GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA
101: SDSISNLNPI DTNFDQTLSL SKSSTSESSL LSLSRTESRG KARERTAKDK DLQSSFTQLL TRGFDEPNRS WTGGGSTDCF NPVQLMPNSN SLNHRQEPSL
201: NHHSQNQYSF LPNYNFGISS SDSPGEAGCY SSRGTLQSNS QPLFLNNNKN INQRSISSSS SSSSPMDSQS ISFFMAPPLH HHSPQLPEAF DGRLYLYYGE
301: GNRSSDDKGK ERR
101: SDSISNLNPI DTNFDQTLSL SKSSTSESSL LSLSRTESRG KARERTAKDK DLQSSFTQLL TRGFDEPNRS WTGGGSTDCF NPVQLMPNSN SLNHRQEPSL
201: NHHSQNQYSF LPNYNFGISS SDSPGEAGCY SSRGTLQSNS QPLFLNNNKN INQRSISSSS SSSSPMDSQS ISFFMAPPLH HHSPQLPEAF DGRLYLYYGE
301: GNRSSDDKGK ERR
001: MEVDEDIELQ KHQEQQSRKL QRFSEDNTGL MRNWNNPSSR IIRVSRASGG KDRHSKVLTS KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
101: ASDSITDLPL LNTNFDHLDQ NQNQTKSACS SGTSESSLLS LSRTEIRGKA RERARERTAK DRDKDLQNAH SSFTQLLTGG FDQQPSNRNW TGGSDCFNPV
201: QLQIPNSSSQ EPMNHPFSFV PDYNFGISSS SSAINGGYSS RGTLQSNSQS LFLNNNNNIT QRSSISSSSS SSSPMDSQSI SFFMATPPPL DHHNHQLPET
301: FDGRLYLYYG EGNRSSDDKA KERR
Arabidopsis Description
TCP24TCP24 [Source:UniProtKB/TrEMBL;Acc:A0A178W971]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.