Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012990.1-P | Field mustard | nucleus | 99.45 | 99.45 |
| CDY58696 | Canola | nucleus | 97.81 | 98.35 |
| AT5G60970.1 | Thale cress | nucleus | 84.7 | 86.11 |
| CDY68618 | Canola | nucleus, plastid | 71.04 | 86.09 |
| CDY47005 | Canola | nucleus, plastid | 69.67 | 84.72 |
| CDX78321 | Canola | nucleus, plastid | 43.99 | 65.45 |
| CDX81083 | Canola | nucleus, plastid | 42.9 | 64.34 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 32.51 | 34.59 |
| Solyc03g115010.1.1 | Tomato | plastid | 31.97 | 34.31 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 29.23 | 31.2 |
| CDX74272 | Canola | nucleus | 25.14 | 28.75 |
| CDX91977 | Canola | nucleus | 25.14 | 28.75 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 22.13 | 27.09 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 25.14 | 23.17 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 24.86 | 21.21 |
| CDY59229 | Canola | nucleus | 17.76 | 20.77 |
| CDX90234 | Canola | nucleus | 17.21 | 20.45 |
| CDY26285 | Canola | nucleus | 17.49 | 20.13 |
| CDX99891 | Canola | nucleus | 17.21 | 19.87 |
| CDY01537 | Canola | nucleus | 15.57 | 18.57 |
| CDY02519 | Canola | nucleus | 16.94 | 18.02 |
| CDY20097 | Canola | nucleus | 16.94 | 17.37 |
| CDY60877 | Canola | nucleus | 16.67 | 17.04 |
| CDY55633 | Canola | nucleus | 17.21 | 16.49 |
| CDX75802 | Canola | nucleus | 18.03 | 16.34 |
| CDY68596 | Canola | cytosol, nucleus | 17.21 | 16.32 |
| CDX82453 | Canola | nucleus | 17.49 | 15.8 |
| CDY10772 | Canola | nucleus | 14.48 | 15.32 |
| CDY10771 | Canola | nucleus | 14.48 | 15.27 |
| CDY24724 | Canola | nucleus | 14.48 | 15.23 |
| CDX96104 | Canola | nucleus | 13.93 | 14.53 |
| CDX95517 | Canola | nucleus | 11.2 | 14.49 |
| CDY01793 | Canola | nucleus | 13.93 | 14.45 |
| CDY18525 | Canola | nucleus | 10.93 | 14.13 |
| CDY12633 | Canola | nucleus | 12.3 | 13.98 |
| CDY46042 | Canola | nucleus | 12.84 | 13.58 |
| CDY07432 | Canola | nucleus | 12.3 | 12.78 |
| CDY28898 | Canola | nucleus | 12.3 | 12.71 |
| CDY33597 | Canola | nucleus | 11.2 | 12.69 |
| CDX81550 | Canola | nucleus | 11.48 | 12.43 |
| CDY45852 | Canola | nucleus | 11.2 | 12.35 |
| CDY62798 | Canola | nucleus | 12.3 | 10.95 |
| CDX82339 | Canola | nucleus | 12.02 | 10.38 |
| CDY52898 | Canola | nucleus | 12.02 | 10.35 |
| CDX97627 | Canola | mitochondrion | 4.37 | 5.84 |
| CDX78849 | Canola | nucleus, plastid | 2.46 | 3.77 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlants:CDY02180 | ProteinID:CDY02180 | ProteinID:CDY02180.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00113586001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF5 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EE50F9 | SEG:seg | : |
Description
BnaA03g39870D
Coordinates
chrLK031932:+:537856..538956
Molecular Weight (calculated)
40741.5 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.911
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRECDEEE IQAKQEGDHN ENNNHQVNLN NMLQQQQQNQ PSSLSSSRQW TSAFRNPRIV RVSRTFGGKD RHSKVCTVRG LRDRRIRLSV PTAIQLYDLQ
101: DRLGLSQPSK VVDWLLEAAK DDVDKLPPLQ FPHGFNQMYP NLFFGNSGIG ESSTSTSAFP GTNLGFLESY DLGGSSSRTR SRIQETPRES FDLDKGKWIK
201: NDENANHHQD HGFDASHQHF SLTNPYNNSN ASSYYNLGHL QHSLDQSGNN VTVAISNVPS NNNNNNLNLP PPSSAGDGSQ LLFGPPPPAM SSLFPTYPSF
301: LGASHHQHHH VVDGAGNLQL FSSNANTASQ QQMMTGNSSL IRPFHHLMSS NHDTDRHSSD DNDSDS
101: DRLGLSQPSK VVDWLLEAAK DDVDKLPPLQ FPHGFNQMYP NLFFGNSGIG ESSTSTSAFP GTNLGFLESY DLGGSSSRTR SRIQETPRES FDLDKGKWIK
201: NDENANHHQD HGFDASHQHF SLTNPYNNSN ASSYYNLGHL QHSLDQSGNN VTVAISNVPS NNNNNNLNLP PPSSAGDGSQ LLFGPPPPAM SSLFPTYPSF
301: LGASHHQHHH VVDGAGNLQL FSSNANTASQ QQMMTGNSSL IRPFHHLMSS NHDTDRHSSD DNDSDS
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.