Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82453 | Canola | nucleus | 98.02 | 97.78 |
| Bra001579.1-P | Field mustard | nucleus | 98.02 | 97.3 |
| CDY68596 | Canola | cytosol, nucleus | 82.18 | 86.01 |
| CDX97627 | Canola | mitochondrion | 56.93 | 83.94 |
| CDY20097 | Canola | nucleus | 71.78 | 81.23 |
| AT3G15030.1 | Thale cress | nucleus | 83.17 | 80.0 |
| CDY02519 | Canola | nucleus | 49.51 | 58.14 |
| Solyc12g014140.1.1 | Tomato | nucleus | 42.82 | 43.91 |
| PGSC0003DMT400039786 | Potato | nucleus | 44.31 | 42.52 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 31.19 | 41.04 |
| CDY10772 | Canola | nucleus | 31.68 | 36.99 |
| CDY10771 | Canola | nucleus | 31.68 | 36.89 |
| CDY24724 | Canola | nucleus | 31.68 | 36.78 |
| CDX81083 | Canola | nucleus, plastid | 15.1 | 25.0 |
| CDX78321 | Canola | nucleus, plastid | 15.1 | 24.8 |
| CDX90234 | Canola | nucleus | 18.07 | 23.7 |
| CDY60877 | Canola | nucleus | 20.79 | 23.46 |
| CDY59229 | Canola | nucleus | 17.82 | 23.0 |
| CDY01537 | Canola | nucleus | 17.08 | 22.48 |
| CDY55633 | Canola | nucleus | 20.79 | 21.99 |
| CDX99891 | Canola | nucleus | 17.08 | 21.77 |
| CDY26285 | Canola | nucleus | 17.08 | 21.7 |
| CDX74272 | Canola | nucleus | 16.83 | 21.25 |
| CDX91977 | Canola | nucleus | 16.83 | 21.25 |
| CDY47005 | Canola | nucleus, plastid | 14.85 | 19.93 |
| CDY68618 | Canola | nucleus, plastid | 14.6 | 19.54 |
| CDY02180 | Canola | nucleus | 16.34 | 18.03 |
| CDY58696 | Canola | nucleus | 16.09 | 17.86 |
| CDY12633 | Canola | nucleus | 14.11 | 17.7 |
| CDY46042 | Canola | nucleus | 14.36 | 16.76 |
| CDY01793 | Canola | nucleus | 14.6 | 16.71 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 16.34 | 16.62 |
| CDX96104 | Canola | nucleus | 14.36 | 16.52 |
| CDY07432 | Canola | nucleus | 13.86 | 15.91 |
| CDY28898 | Canola | nucleus | 13.86 | 15.82 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 16.09 | 15.15 |
| CDY33597 | Canola | nucleus | 11.63 | 14.55 |
| CDX81550 | Canola | nucleus | 12.13 | 14.5 |
| CDY18525 | Canola | nucleus | 10.15 | 14.49 |
| CDX95517 | Canola | nucleus | 10.15 | 14.49 |
| CDY45852 | Canola | nucleus | 11.88 | 14.46 |
| CDX78849 | Canola | nucleus, plastid | 8.17 | 13.81 |
| CDX82339 | Canola | nucleus | 10.89 | 10.38 |
| CDY52898 | Canola | nucleus | 10.89 | 10.35 |
| CDY62798 | Canola | nucleus | 9.9 | 9.73 |
Protein Annotations
| EnsemblPlants:CDX75802 | EnsemblPlantsGene:GSBRNA2T00123757001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF13 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDX75802 | ProteinID:CDX75802.1 | SEG:seg |
| UniParc:UPI0004EBCF7F | MapMan:15.5.19 | : | : | : | : |
Description
BnaC03g38850D
Coordinates
chrLK031805:+:814623..816896
Molecular Weight (calculated)
44099.9 Da
IEP (calculated)
8.036
GRAVY (calculated)
-0.791
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEDEAHRF LHPPAPPSSS SMRRRATSEA ANGGCGEIVE VQGGHIVRST GRKDRHSKVC TAKGPRDRRV RLSAHTAIQF YDVQDRLGFD RPSKAVDWLI
101: KKAKTSIDEL AQLPPWDPAD AIRNAAANAK PRRTAAKARV SPSPPPQQLQ FSGGTAVGFA GATGRRSNDN ESSFLPPSMD SDSIADTIKS FFPVVGSTAE
201: APPHQLMHNY HHHHPPDLLS RTNSQNQDLR LSLQPFPDGP PSLLHHHHHH SVAEPVLFYG QSNPLGYDAS TGGWEQQSIQ RLVAWNSGGA NDTGNGGGGG
301: FLFAPPPNHP STTSFQPVLG QSQLYSQRGP LQSSYSPMIR AWFDPTHHHH QSISSDDLNH HHHMPPPIAS GEFSSGFRVP ARFQGQEEEQ HDGLNNKPSS
401: ASRH
101: KKAKTSIDEL AQLPPWDPAD AIRNAAANAK PRRTAAKARV SPSPPPQQLQ FSGGTAVGFA GATGRRSNDN ESSFLPPSMD SDSIADTIKS FFPVVGSTAE
201: APPHQLMHNY HHHHPPDLLS RTNSQNQDLR LSLQPFPDGP PSLLHHHHHH SVAEPVLFYG QSNPLGYDAS TGGWEQQSIQ RLVAWNSGGA NDTGNGGGGG
301: FLFAPPPNHP STTSFQPVLG QSQLYSQRGP LQSSYSPMIR AWFDPTHHHH QSISSDDLNH HHHMPPPIAS GEFSSGFRVP ARFQGQEEEQ HDGLNNKPSS
401: ASRH
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.