Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97627 | Canola | mitochondrion | 67.62 | 95.26 |
| Bra027284.1-P | Field mustard | nucleus | 94.56 | 89.9 |
| CDX82453 | Canola | nucleus | 86.79 | 82.72 |
| CDX75802 | Canola | nucleus | 86.01 | 82.18 |
| AT3G15030.1 | Thale cress | nucleus | 87.82 | 80.71 |
| CDY20097 | Canola | nucleus | 73.06 | 78.99 |
| CDY02519 | Canola | nucleus | 52.33 | 58.72 |
| Solyc12g014140.1.1 | Tomato | nucleus | 45.6 | 44.67 |
| PGSC0003DMT400039786 | Potato | nucleus | 47.15 | 43.23 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 34.2 | 43.0 |
| CDY10772 | Canola | nucleus | 33.42 | 37.28 |
| CDY10771 | Canola | nucleus | 33.42 | 37.18 |
| CDY24724 | Canola | nucleus | 33.42 | 37.07 |
| CDX81083 | Canola | nucleus, plastid | 15.54 | 24.59 |
| CDX78321 | Canola | nucleus, plastid | 15.54 | 24.39 |
| CDX90234 | Canola | nucleus | 18.39 | 23.05 |
| CDY59229 | Canola | nucleus | 18.13 | 22.36 |
| CDY60877 | Canola | nucleus | 20.47 | 22.07 |
| CDY01537 | Canola | nucleus | 17.36 | 21.82 |
| CDX99891 | Canola | nucleus | 17.88 | 21.77 |
| CDY26285 | Canola | nucleus | 17.88 | 21.7 |
| CDY55633 | Canola | nucleus | 20.21 | 20.42 |
| CDX74272 | Canola | nucleus | 16.58 | 20.0 |
| CDX91977 | Canola | nucleus | 16.58 | 20.0 |
| CDY47005 | Canola | nucleus, plastid | 15.03 | 19.27 |
| CDY68618 | Canola | nucleus, plastid | 14.77 | 18.87 |
| CDY58696 | Canola | nucleus | 16.32 | 17.31 |
| CDY02180 | Canola | nucleus | 16.32 | 17.21 |
| CDY12633 | Canola | nucleus | 13.99 | 16.77 |
| CDY01793 | Canola | nucleus | 15.29 | 16.71 |
| CDX96104 | Canola | nucleus | 15.03 | 16.52 |
| CDY46042 | Canola | nucleus | 14.51 | 16.18 |
| CDY07432 | Canola | nucleus | 14.25 | 15.62 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 16.06 | 15.62 |
| CDY28898 | Canola | nucleus | 13.99 | 15.25 |
| CDX81550 | Canola | nucleus | 12.69 | 14.5 |
| CDY33597 | Canola | nucleus | 11.92 | 14.24 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 15.8 | 14.22 |
| CDY45852 | Canola | nucleus | 12.18 | 14.16 |
| CDX95517 | Canola | nucleus | 10.36 | 14.13 |
| CDY18525 | Canola | nucleus | 10.36 | 14.13 |
| CDX78849 | Canola | nucleus, plastid | 7.25 | 11.72 |
| CDY52898 | Canola | nucleus | 11.66 | 10.59 |
| CDX82339 | Canola | nucleus | 11.4 | 10.38 |
| CDY62798 | Canola | nucleus | 10.36 | 9.73 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078JSH4 | EnsemblPlants:CDY68596 | ProteinID:CDY68596 | ProteinID:CDY68596.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075987001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF13 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF4A0F | SEG:seg |
Description
BnaCnng59700DBnaCnng59700D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JSH4]
Coordinates
chrLK037624:-:3783..5460
Molecular Weight (calculated)
42350.0 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.811
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: SMRHREAANG GCGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLS AHTAIQFYDV QDRLGFDRPS KAVDWLIKKA KASIDELAQL PPWNPADAMR
101: NAAANAKPRR TAAKTRISPS PPPPPPSQQQ QQQLQFGGFE GVAEHRGNES SFLPPSMDSD SIADTIKSFF PVVGSTTEAP PPNQLMHSNY HHHPPNLLSR
201: TNSHNQDLRL SLHSFPDGPP SLLQHHHSAS ASTAEPVLFY GQSNPLGYDT STGGWEQQSI QRLVAWNSGG ATETGNGGGG GFLFAPPAAT SFQPVLGQSQ
301: LYSQRGPLQS SYSPMIRAWF DPHHHHHQSI STDDLNHHHH HIPQPVHQGE FSSGFRIPAR FQGQEEEQHD GLSNKPSSAS SISRHR
101: NAAANAKPRR TAAKTRISPS PPPPPPSQQQ QQQLQFGGFE GVAEHRGNES SFLPPSMDSD SIADTIKSFF PVVGSTTEAP PPNQLMHSNY HHHPPNLLSR
201: TNSHNQDLRL SLHSFPDGPP SLLQHHHSAS ASTAEPVLFY GQSNPLGYDT STGGWEQQSI QRLVAWNSGG ATETGNGGGG GFLFAPPAAT SFQPVLGQSQ
301: LYSQRGPLQS SYSPMIRAWF DPHHHHHQSI STDDLNHHHH HIPQPVHQGE FSSGFRIPAR FQGQEEEQHD GLSNKPSSAS SISRHR
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.