Factsheet for Solyc12g014140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039786	Potato	nucleus	84.52	79.1
Solyc07g062680.1.1	Tomato	nucleus	54.57	53.75
Bra021586.1-P	Field mustard	nucleus	40.61	45.71
CDY68596	Canola	cytosol, nucleus	44.67	45.6
CDY20097	Canola	nucleus	40.36	44.54
AT3G15030.1	Thale cress	nucleus	47.21	44.29
CDX82453	Canola	nucleus	44.42	43.21
Bra027284.1-P	Field mustard	nucleus	44.42	43.1
CDX75802	Canola	nucleus	43.91	42.82
Bra001579.1-P	Field mustard	nucleus	44.16	42.75
VIT_12s0028g02520.t01	Wine grape	nucleus	30.96	39.74
Solyc07g053410.2.1	Tomato	cytosol	24.11	38.93
Solyc10g018710.1.1	Tomato	nucleus	16.5	38.01
Solyc05g012840.1.1	Tomato	nucleus	21.32	37.67
TraesCS3B01G164500.1	Wheat	nucleus	42.64	37.33
TraesCS3D01G146900.1	Wheat	nucleus	42.39	36.78
TraesCS3A01G140100.1	Wheat	nucleus	42.64	36.76
Zm00001d008919_P001	Maize	nucleus, plastid	39.34	36.47
Solyc02g065800.1.1	Tomato	cytosol, plastid	11.17	30.99
Solyc05g032780.1.1	Tomato	nucleus	16.5	30.66
Solyc11g045640.1.1	Tomato	nucleus	17.01	30.59
Zm00001d039371_P001	Maize	mitochondrion	42.39	29.56
Os01t0213800-01	Rice	mitochondrion	42.89	29.19
Os01t0755500-01	Rice	cytosol, mitochondrion	32.99	29.15
KXG33398	Sorghum	nucleus	33.25	29.05
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	42.89	28.64
Zm00001d043423_P001	Maize	nucleus	31.47	28.57
Solyc02g077250.2.1	Tomato	nucleus	25.13	27.97
OQU86111	Sorghum	plastid	42.89	26.95
Solyc02g089020.1.1	Tomato	nucleus, plastid	15.74	21.83
Solyc06g069460.1.1	Tomato	plastid	14.72	20.86
Solyc08g048370.2.1	Tomato	cytosol	16.24	19.63
Solyc03g115010.1.1	Tomato	plastid	16.75	19.35
Solyc08g048390.1.1	Tomato	nucleus	18.78	19.12
HORVU0Hr1G006890.2	Barley	cytosol	10.41	19.07
Zm00001d012725_P002	Maize	plastid	31.98	18.05
Solyc10g008780.1.1	Tomato	nucleus	26.65	18.04
Solyc03g045030.1.1	Tomato	nucleus	7.87	16.94
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	10.15	16.6
Solyc04g006980.1.1	Tomato	nucleus	14.21	14.93
Solyc05g009900.1.1	Tomato	nucleus	12.94	14.45
Solyc03g119770.2.1	Tomato	nucleus	12.18	13.87
Solyc06g069240.1.1	Tomato	nucleus	13.2	12.81

Protein Annotations

MapMan:15.5.19	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009965	GO:GO:0009987	GO:GO:0030154
GO:GO:0045962	GO:GO:0048366	GO:GO:0048826	InterPro:IPR017887	UniProt:K4DCU9	PFAM:PF03634
PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	EnsemblPlantsGene:Solyc12g014140.1	EnsemblPlants:Solyc12g014140.1.1	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI000276A650	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:4950340..4951524

Molecular Weight (calculated)

42879.8 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.591

Length

394 amino acids

Sequence
(BLAST)

001: MYEDLDTIKQ QQEQARSKKR SFFPPPPPRP SCSKQKGVTS SKFGCGEIVE VQGGHIIRSI GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD
101: RPSKAVDWLI KKAKASIDEL AELPPWKPTT TGVDHALQDD IDVGTASTIM LGQNNSASSS GENVNANTKA DGSFMPHSLD SDAISDTIKS FFPMGGSGSN
201: EGNSFQSFQQ HNLMSRSQDL KLSLQSFQDP QAQFEASNFF TGFDASVWPQ HQQQPVELGR LAAARGDIGG GAIAGAGSYL FNSQPAPPLL QQLFTQNQFL
301: SQRGPLQSSY SPSIRAWIDP SAIAIATADP IHQNQNHHQA VFPMYSTSLS GIGFASELGG FSGFRIPTRI QGEIEEEHDG VSDKPSSASS DSRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.