CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90936
EER93679
KXG28671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	EER90936	AT2G22840.1	21245844
AT2G31070.1	EER93679	AT2G22840.1	21245844
AT2G31070.1	KXG28671	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039371_P001	Maize	mitochondrion	78.63	87.26
Zm00001d008919_P001	Maize	nucleus, plastid	56.14	82.82
TraesCS3B01G164500.1	Wheat	nucleus	57.1	79.56
TraesCS3D01G146900.1	Wheat	nucleus	56.94	78.63
TraesCS3A01G140100.1	Wheat	nucleus	56.94	78.12
Os01t0213800-01	Rice	mitochondrion	71.45	77.37
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	70.18	74.58
GSMUA_Achr10P...	Banana	nucleus	22.81	53.96
GSMUA_Achr10P...	Banana	nucleus	20.89	52.61
VIT_19s0014g01680.t01	Wine grape	nucleus	32.22	50.75
GSMUA_Achr6P14430_001	Banana	nucleus	18.5	48.33
KRH26201	Soybean	nucleus	30.46	48.11
KRH55125	Soybean	nucleus	29.82	47.83
KRH27317	Soybean	nucleus	28.55	47.48
Solyc07g062680.1.1	Tomato	nucleus	29.98	47.0
PGSC0003DMT400032269	Potato	nucleus	29.82	46.75
GSMUA_Achr3P03540_001	Banana	nucleus	29.82	46.52
KRH22307	Soybean	nucleus	24.88	45.35
KRH27017	Soybean	nucleus	24.72	45.19
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	33.17	44.16
KRH21998	Soybean	nucleus	27.59	44.02
PGSC0003DMT400039786	Potato	nucleus	29.03	43.23
KRH25697	Soybean	nucleus	19.94	42.96
Solyc12g014140.1.1	Tomato	nucleus	26.95	42.89
Bra021586.1-P	Field mustard	nucleus	23.76	42.57
VIT_12s0028g02520.t01	Wine grape	nucleus	20.73	42.35
AT3G15030.1	Thale cress	nucleus	28.23	42.14
AT1G53230.1	Thale cress	nucleus	25.84	41.43
Solyc07g053410.2.1	Tomato	cytosol	16.11	41.39
Bra027284.1-P	Field mustard	nucleus	26.48	40.89
Bra001579.1-P	Field mustard	nucleus	26.16	40.29
Bra030952.1-P	Field mustard	nucleus	22.01	40.0
KRH55819	Soybean	nucleus	20.57	38.74
Bra018280.1-P	Field mustard	nucleus	21.53	38.68
AT2G31070.1	Thale cress	nucleus	22.17	38.5
PGSC0003DMT400024329	Potato	nucleus	18.82	37.94
Solyc05g012840.1.1	Tomato	nucleus	13.4	37.67
Solyc10g018710.1.1	Tomato	nucleus	10.21	37.43
OQU89064	Sorghum	cytosol	4.31	33.75
KXG33398	Sorghum	nucleus	23.45	32.59
Solyc11g045640.1.1	Tomato	nucleus	11.0	31.51
Solyc05g032780.1.1	Tomato	nucleus	10.53	31.13
PGSC0003DMT400059117	Potato	nucleus	16.11	30.24
VIT_10s0003g00870.t01	Wine grape	nucleus	17.86	29.32
Solyc02g077250.2.1	Tomato	nucleus	15.79	27.97
EES16387	Sorghum	cytosol, nucleus, plastid	12.92	26.82
KXG37409	Sorghum	cytosol	14.51	23.39
EES03657	Sorghum	nucleus	10.21	22.15
EES18493	Sorghum	cytosol	10.37	21.81
EER95875	Sorghum	cytosol, nucleus, peroxisome	15.63	21.26
EER96723	Sorghum	nucleus	8.29	19.4
EES13882	Sorghum	cytosol	7.81	19.07
PGSC0003DMT400068478	Potato	nucleus	15.31	18.43
Solyc10g008780.1.1	Tomato	nucleus	15.79	17.01
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	9.25	15.26

Protein Annotations

MapMan:15.5.19	UniProt:A0A1W0VVH8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
EnsemblPlants:OQU86111	ProteinID:OQU86111	ProteinID:OQU86111.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF66	EnsemblPlantsGene:SORBI_3003G018700	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0009DC88EB	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:1672644..1677633

Molecular Weight (calculated)

65900.3 Da

IEP (calculated)

9.340

GRAVY (calculated)

-0.663

Length

627 amino acids

Sequence
(BLAST)

001: MPRHPTPSPY KFGFPNTPRC PRCVSSNLQQ LSLVPRQLAR GWQQRQSQVT HAPYGLRRGG WTRIVGRRAA VAAPKQKQAG DLDPRHDHRA PRGGDGGGGG
101: GGGGAQQEAD EQQRHHHHRL LQLHQQVQQD QDPPPVPLFQ LQHLQAAAAV RQRGGLPAEY ALLTPMGDAG QSHSHHHAFQ PQLLSFGGVG QHHVHQFTAQ
201: AQAAPPAASH SRSRGGGAGG EVAVAPMSAS HSRVRGGAGG GGEIVAVQGG HIVRSTGRKD RHSKVCTARG PRDRRVRLSA HTAIQFYDVQ DRLGYDRPSK
301: AVDWLIKNAK DAIDKLETLP AWQPTATGAN AVAPPSSSTH PDSAENSDDE AQAITVAHTA FDFPGAAGAG GGGSGAGFLP SSLDSDSIAD TIKSFFPMAG
401: TGGGEASSST AATQSSAMGF QSYTPDLLSR TGNHSQELRL SLQSLPDPMF HHQHQDRSQQ GHGGNGSAQQ ALFPGAASYS FVGGGGGTMW GEQAQSQRML
501: PWNVPDPGGG STGSYLFNVS QQAVSQQAAH MQAALGGQSQ FFFQRGPLQS SNQPSERGWP EIVEADNPMQ QQHGGGLSPT VSAIGFTPGI GFSGMRIPTR
601: IQGDEEHNGG SGNGDKPPPS VSSASHH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.